Experiment: Nickel (II) chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_03230 and IAI46_03235 are separated by 39 nucleotides IAI46_03235 and IAI46_03240 are separated by 2 nucleotides IAI46_03240 and IAI46_03245 are separated by 12 nucleotides IAI46_03245 and IAI46_03250 overlap by 8 nucleotides
IAI46_03230: IAI46_03230 - PhoX family phosphatase, at 693,712 to 695,601
_03230
IAI46_03235: IAI46_03235 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH, at 695,641 to 696,492
_03235
IAI46_03240: IAI46_03240 - Co2+/Mg2+ efflux protein ApaG, at 696,495 to 696,872
_03240
IAI46_03245: IAI46_03245 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 696,885 to 697,703
_03245
IAI46_03250: IAI46_03250 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 697,696 to 698,688
_03250
Position (kb) 696
697 Strain fitness (log2 ratio) -2
-1
0
1
2 at 695.535 kb on + strand at 695.569 kb on - strand at 695.600 kb on - strand at 695.600 kb on - strand at 695.642 kb on + strand at 695.642 kb on + strand at 695.642 kb on + strand at 695.643 kb on - strand at 695.662 kb on + strand at 695.663 kb on - strand at 695.705 kb on + strand at 695.706 kb on - strand at 695.831 kb on + strand, within IAI46_03235 at 695.831 kb on + strand, within IAI46_03235 at 695.913 kb on + strand, within IAI46_03235 at 696.026 kb on + strand, within IAI46_03235 at 696.026 kb on + strand, within IAI46_03235 at 696.027 kb on - strand, within IAI46_03235 at 696.027 kb on - strand, within IAI46_03235 at 696.317 kb on - strand, within IAI46_03235 at 696.317 kb on - strand, within IAI46_03235 at 696.341 kb on + strand, within IAI46_03235 at 696.355 kb on + strand, within IAI46_03235 at 696.356 kb on - strand, within IAI46_03235 at 696.356 kb on - strand, within IAI46_03235 at 696.437 kb on - strand at 696.478 kb on - strand at 696.482 kb on + strand at 696.483 kb on - strand at 696.483 kb on - strand at 696.483 kb on - strand at 696.492 kb on + strand at 696.493 kb on - strand at 696.493 kb on - strand at 696.493 kb on - strand at 696.578 kb on - strand, within IAI46_03240 at 696.628 kb on + strand, within IAI46_03240 at 696.628 kb on + strand, within IAI46_03240 at 696.779 kb on + strand, within IAI46_03240 at 696.779 kb on + strand, within IAI46_03240 at 696.779 kb on + strand, within IAI46_03240 at 696.780 kb on - strand, within IAI46_03240 at 696.780 kb on - strand, within IAI46_03240 at 696.780 kb on - strand, within IAI46_03240 at 696.781 kb on + strand, within IAI46_03240 at 696.782 kb on - strand, within IAI46_03240 at 696.794 kb on - strand, within IAI46_03240 at 696.794 kb on - strand, within IAI46_03240 at 696.794 kb on - strand, within IAI46_03240 at 696.829 kb on + strand, within IAI46_03240 at 696.830 kb on - strand, within IAI46_03240 at 696.830 kb on - strand, within IAI46_03240 at 696.840 kb on + strand at 696.841 kb on - strand at 696.841 kb on - strand at 696.848 kb on + strand at 696.849 kb on - strand at 696.849 kb on - strand at 696.852 kb on + strand at 696.852 kb on + strand at 696.853 kb on - strand at 696.853 kb on - strand at 696.880 kb on - strand at 696.880 kb on - strand at 696.886 kb on + strand at 696.887 kb on - strand at 697.290 kb on - strand, within IAI46_03245 at 697.715 kb on - strand at 697.866 kb on - strand, within IAI46_03250 at 697.866 kb on - strand, within IAI46_03250
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic remove 695,535 + +0.6 695,569 - +1.0 695,600 - -0.4 695,600 - -0.3 695,642 + -0.1 695,642 + +0.0 695,642 + +0.4 695,643 - -0.0 695,662 + -0.2 695,663 - -1.0 695,705 + +0.4 695,706 - +0.8 695,831 + IAI46_03235 0.22 +0.3 695,831 + IAI46_03235 0.22 +1.3 695,913 + IAI46_03235 0.32 -2.5 696,026 + IAI46_03235 0.45 +0.9 696,026 + IAI46_03235 0.45 -1.8 696,027 - IAI46_03235 0.45 +0.2 696,027 - IAI46_03235 0.45 -1.3 696,317 - IAI46_03235 0.79 -0.0 696,317 - IAI46_03235 0.79 +0.4 696,341 + IAI46_03235 0.82 -2.1 696,355 + IAI46_03235 0.84 +0.1 696,356 - IAI46_03235 0.84 -0.4 696,356 - IAI46_03235 0.84 -1.7 696,437 - +0.3 696,478 - +0.6 696,482 + +0.1 696,483 - -0.4 696,483 - -0.4 696,483 - +1.6 696,492 + -1.0 696,493 - +0.1 696,493 - +0.5 696,493 - -0.0 696,578 - IAI46_03240 0.22 +1.8 696,628 + IAI46_03240 0.35 -0.1 696,628 + IAI46_03240 0.35 -0.9 696,779 + IAI46_03240 0.75 +1.2 696,779 + IAI46_03240 0.75 -0.2 696,779 + IAI46_03240 0.75 -0.0 696,780 - IAI46_03240 0.75 +0.5 696,780 - IAI46_03240 0.75 +0.1 696,780 - IAI46_03240 0.75 +0.3 696,781 + IAI46_03240 0.76 -0.9 696,782 - IAI46_03240 0.76 +0.5 696,794 - IAI46_03240 0.79 +0.2 696,794 - IAI46_03240 0.79 +0.3 696,794 - IAI46_03240 0.79 -1.1 696,829 + IAI46_03240 0.88 -0.0 696,830 - IAI46_03240 0.89 +0.6 696,830 - IAI46_03240 0.89 -0.4 696,840 + -0.0 696,841 - +0.0 696,841 - +1.7 696,848 + -0.1 696,849 - +1.3 696,849 - -0.0 696,852 + -0.1 696,852 + -0.9 696,853 - -0.1 696,853 - -0.8 696,880 - +0.9 696,880 - -0.9 696,886 + +0.7 696,887 - +0.2 697,290 - IAI46_03245 0.49 -0.3 697,715 - -0.0 697,866 - IAI46_03250 0.17 -2.2 697,866 - IAI46_03250 0.17 -0.7
Or see this region's nucleotide sequence