Strain Fitness in Serratia liquefaciens MT49 around IAI46_03025

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03020 and IAI46_03025 are separated by 212 nucleotidesIAI46_03025 and IAI46_03030 are separated by 82 nucleotides IAI46_03020: IAI46_03020 - tRNA/rRNA methyltransferase, at 643,943 to 644,629 _03020 IAI46_03025: IAI46_03025 - thr operon leader peptide, at 644,842 to 644,910 _03025 IAI46_03030: IAI46_03030 - bifunctional aspartate kinase/homoserine dehydrogenase I, at 644,993 to 647,452 _03030 Position (kb) 644 645Strain fitness (log2 ratio) -2 -1 0 1 2at 643.846 kb on + strandat 643.864 kb on + strandat 643.886 kb on + strandat 643.926 kb on + strandat 643.938 kb on + strandat 643.954 kb on + strandat 643.954 kb on + strandat 643.955 kb on - strandat 643.963 kb on - strandat 644.027 kb on - strand, within IAI46_03020at 644.102 kb on - strand, within IAI46_03020at 644.154 kb on + strand, within IAI46_03020at 644.201 kb on + strand, within IAI46_03020at 644.202 kb on - strand, within IAI46_03020at 644.204 kb on + strand, within IAI46_03020at 644.204 kb on + strand, within IAI46_03020at 644.204 kb on + strand, within IAI46_03020at 644.204 kb on + strand, within IAI46_03020at 644.205 kb on - strand, within IAI46_03020at 644.209 kb on + strand, within IAI46_03020at 644.341 kb on - strand, within IAI46_03020at 644.341 kb on - strand, within IAI46_03020at 644.344 kb on + strand, within IAI46_03020at 644.344 kb on + strand, within IAI46_03020at 644.344 kb on + strand, within IAI46_03020at 644.344 kb on + strand, within IAI46_03020at 644.344 kb on + strand, within IAI46_03020at 644.344 kb on + strand, within IAI46_03020at 644.344 kb on + strand, within IAI46_03020at 644.345 kb on - strand, within IAI46_03020at 644.345 kb on - strand, within IAI46_03020at 644.345 kb on - strand, within IAI46_03020at 644.345 kb on - strand, within IAI46_03020at 644.345 kb on - strand, within IAI46_03020at 644.345 kb on - strand, within IAI46_03020at 644.393 kb on + strand, within IAI46_03020at 644.393 kb on + strand, within IAI46_03020at 644.394 kb on - strand, within IAI46_03020at 644.394 kb on - strand, within IAI46_03020at 644.394 kb on - strand, within IAI46_03020at 644.394 kb on - strand, within IAI46_03020at 644.394 kb on - strand, within IAI46_03020at 644.399 kb on + strand, within IAI46_03020at 644.400 kb on - strand, within IAI46_03020at 644.472 kb on + strand, within IAI46_03020at 644.472 kb on + strand, within IAI46_03020at 644.473 kb on - strand, within IAI46_03020at 644.473 kb on - strand, within IAI46_03020at 644.590 kb on + strandat 644.590 kb on + strandat 644.636 kb on + strandat 644.636 kb on + strandat 644.646 kb on + strandat 644.749 kb on + strandat 644.749 kb on + strandat 644.750 kb on - strandat 644.750 kb on - strandat 644.753 kb on + strandat 644.754 kb on - strandat 644.804 kb on + strandat 644.804 kb on + strandat 644.818 kb on + strandat 644.819 kb on - strandat 644.819 kb on - strandat 644.823 kb on - strandat 644.823 kb on - strandat 644.823 kb on - strandat 644.872 kb on - strand, within IAI46_03025at 644.872 kb on - strand, within IAI46_03025at 644.874 kb on + strand, within IAI46_03025at 644.874 kb on + strand, within IAI46_03025at 644.945 kb on + strandat 644.945 kb on + strandat 644.946 kb on - strandat 644.946 kb on - strandat 645.071 kb on - strandat 645.071 kb on - strandat 645.181 kb on + strandat 645.181 kb on + strandat 645.182 kb on - strandat 645.358 kb on + strand, within IAI46_03030at 645.358 kb on + strand, within IAI46_03030at 645.454 kb on - strand, within IAI46_03030at 645.486 kb on + strand, within IAI46_03030at 645.487 kb on - strand, within IAI46_03030at 645.490 kb on + strand, within IAI46_03030at 645.617 kb on + strand, within IAI46_03030at 645.689 kb on + strand, within IAI46_03030at 645.691 kb on + strand, within IAI46_03030at 645.692 kb on - strand, within IAI46_03030at 645.692 kb on - strand, within IAI46_03030at 645.767 kb on + strand, within IAI46_03030at 645.902 kb on - strand, within IAI46_03030

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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643,846 + +0.7
643,864 + -0.3
643,886 + +0.7
643,926 + +0.4
643,938 + +0.0
643,954 + -0.1
643,954 + +1.2
643,955 - +0.5
643,963 - -0.2
644,027 - IAI46_03020 0.12 -0.7
644,102 - IAI46_03020 0.23 +0.3
644,154 + IAI46_03020 0.31 +0.0
644,201 + IAI46_03020 0.38 -0.6
644,202 - IAI46_03020 0.38 +0.0
644,204 + IAI46_03020 0.38 -0.8
644,204 + IAI46_03020 0.38 -0.1
644,204 + IAI46_03020 0.38 +0.6
644,204 + IAI46_03020 0.38 +0.7
644,205 - IAI46_03020 0.38 +1.1
644,209 + IAI46_03020 0.39 -0.5
644,341 - IAI46_03020 0.58 +0.1
644,341 - IAI46_03020 0.58 -1.7
644,344 + IAI46_03020 0.58 +0.0
644,344 + IAI46_03020 0.58 -1.6
644,344 + IAI46_03020 0.58 -0.8
644,344 + IAI46_03020 0.58 +0.3
644,344 + IAI46_03020 0.58 +0.1
644,344 + IAI46_03020 0.58 -0.0
644,344 + IAI46_03020 0.58 +2.5
644,345 - IAI46_03020 0.59 -0.1
644,345 - IAI46_03020 0.59 -0.3
644,345 - IAI46_03020 0.59 +0.6
644,345 - IAI46_03020 0.59 +0.1
644,345 - IAI46_03020 0.59 +0.3
644,345 - IAI46_03020 0.59 +0.1
644,393 + IAI46_03020 0.66 +0.3
644,393 + IAI46_03020 0.66 -0.5
644,394 - IAI46_03020 0.66 -1.1
644,394 - IAI46_03020 0.66 +0.8
644,394 - IAI46_03020 0.66 -0.3
644,394 - IAI46_03020 0.66 -0.5
644,394 - IAI46_03020 0.66 +0.9
644,399 + IAI46_03020 0.66 +0.2
644,400 - IAI46_03020 0.67 +0.6
644,472 + IAI46_03020 0.77 +0.1
644,472 + IAI46_03020 0.77 +0.7
644,473 - IAI46_03020 0.77 -0.6
644,473 - IAI46_03020 0.77 -1.1
644,590 + +0.8
644,590 + +1.0
644,636 + -0.7
644,636 + -1.0
644,646 + -0.3
644,749 + +0.2
644,749 + +0.5
644,750 - +0.7
644,750 - +0.2
644,753 + +0.0
644,754 - -0.9
644,804 + +0.2
644,804 + +0.4
644,818 + +0.7
644,819 - -0.5
644,819 - -0.7
644,823 - -0.1
644,823 - +0.7
644,823 - -2.0
644,872 - IAI46_03025 0.43 -1.3
644,872 - IAI46_03025 0.43 -1.2
644,874 + IAI46_03025 0.46 +0.3
644,874 + IAI46_03025 0.46 -0.1
644,945 + +0.5
644,945 + +0.4
644,946 - +0.9
644,946 - -1.9
645,071 - -1.4
645,071 - -1.0
645,181 + -1.5
645,181 + -1.9
645,182 - -1.1
645,358 + IAI46_03030 0.15 +0.2
645,358 + IAI46_03030 0.15 -1.1
645,454 - IAI46_03030 0.19 -0.7
645,486 + IAI46_03030 0.20 -0.1
645,487 - IAI46_03030 0.20 -0.5
645,490 + IAI46_03030 0.20 -0.2
645,617 + IAI46_03030 0.25 +0.7
645,689 + IAI46_03030 0.28 -1.4
645,691 + IAI46_03030 0.28 -2.1
645,692 - IAI46_03030 0.28 -1.2
645,692 - IAI46_03030 0.28 -1.1
645,767 + IAI46_03030 0.31 -0.8
645,902 - IAI46_03030 0.37 -0.6

Or see this region's nucleotide sequence