Strain Fitness in Serratia liquefaciens MT49 around IAI46_02800

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02790 and IAI46_02795 are separated by 38 nucleotidesIAI46_02795 and IAI46_02800 are separated by 14 nucleotidesIAI46_02800 and IAI46_02805 are separated by 14 nucleotidesIAI46_02805 and IAI46_02810 overlap by 23 nucleotides IAI46_02790: IAI46_02790 - SDR family oxidoreductase, at 600,946 to 601,686 _02790 IAI46_02795: IAI46_02795 - fumarylacetoacetate hydrolase family protein, at 601,725 to 602,570 _02795 IAI46_02800: IAI46_02800 - L-fuconate dehydratase, at 602,585 to 603,862 _02800 IAI46_02805: IAI46_02805 - amidohydrolase family protein, at 603,877 to 604,740 _02805 IAI46_02810: IAI46_02810 - SDR family oxidoreductase, at 604,718 to 605,494 _02810 Position (kb) 602 603 604Strain fitness (log2 ratio) -2 -1 0 1 2at 601.616 kb on - strandat 601.616 kb on - strandat 601.639 kb on + strandat 601.639 kb on + strandat 601.639 kb on + strandat 601.710 kb on + strandat 601.711 kb on - strandat 601.736 kb on - strandat 601.771 kb on + strandat 601.811 kb on + strand, within IAI46_02795at 601.812 kb on - strand, within IAI46_02795at 601.812 kb on - strand, within IAI46_02795at 601.963 kb on - strand, within IAI46_02795at 601.963 kb on - strand, within IAI46_02795at 602.114 kb on + strand, within IAI46_02795at 602.115 kb on - strand, within IAI46_02795at 602.133 kb on + strand, within IAI46_02795at 602.134 kb on - strand, within IAI46_02795at 602.135 kb on + strand, within IAI46_02795at 602.135 kb on + strand, within IAI46_02795at 602.135 kb on + strand, within IAI46_02795at 602.135 kb on + strand, within IAI46_02795at 602.136 kb on - strand, within IAI46_02795at 602.136 kb on - strand, within IAI46_02795at 602.136 kb on - strand, within IAI46_02795at 602.136 kb on - strand, within IAI46_02795at 602.136 kb on - strand, within IAI46_02795at 602.225 kb on + strand, within IAI46_02795at 602.225 kb on + strand, within IAI46_02795at 602.400 kb on + strand, within IAI46_02795at 602.401 kb on - strand, within IAI46_02795at 602.414 kb on + strand, within IAI46_02795at 602.414 kb on + strand, within IAI46_02795at 602.415 kb on - strand, within IAI46_02795at 602.415 kb on - strand, within IAI46_02795at 602.561 kb on - strandat 602.596 kb on + strandat 602.617 kb on + strandat 602.617 kb on + strandat 602.678 kb on + strandat 602.690 kb on + strandat 602.690 kb on + strandat 602.690 kb on + strandat 602.690 kb on + strandat 602.690 kb on + strandat 602.691 kb on - strandat 602.744 kb on - strand, within IAI46_02800at 602.861 kb on - strand, within IAI46_02800at 603.052 kb on + strand, within IAI46_02800at 603.143 kb on + strand, within IAI46_02800at 603.143 kb on + strand, within IAI46_02800at 603.144 kb on - strand, within IAI46_02800at 603.144 kb on - strand, within IAI46_02800at 603.144 kb on - strand, within IAI46_02800at 603.144 kb on - strand, within IAI46_02800at 603.502 kb on + strand, within IAI46_02800at 603.541 kb on - strand, within IAI46_02800at 603.611 kb on + strand, within IAI46_02800at 603.611 kb on + strand, within IAI46_02800at 603.611 kb on + strand, within IAI46_02800at 603.612 kb on - strand, within IAI46_02800at 603.659 kb on + strand, within IAI46_02800at 603.686 kb on + strand, within IAI46_02800at 603.687 kb on - strand, within IAI46_02800at 603.687 kb on - strand, within IAI46_02800at 603.687 kb on - strand, within IAI46_02800at 603.688 kb on + strand, within IAI46_02800at 603.785 kb on + strandat 603.785 kb on + strandat 603.785 kb on + strandat 603.785 kb on + strandat 603.785 kb on + strandat 603.786 kb on - strandat 603.788 kb on - strandat 603.845 kb on + strandat 603.904 kb on + strandat 603.904 kb on + strandat 603.904 kb on + strandat 603.905 kb on - strandat 603.914 kb on - strandat 603.914 kb on - strandat 604.285 kb on + strand, within IAI46_02805at 604.286 kb on - strand, within IAI46_02805at 604.352 kb on - strand, within IAI46_02805at 604.361 kb on + strand, within IAI46_02805at 604.362 kb on - strand, within IAI46_02805at 604.470 kb on + strand, within IAI46_02805at 604.470 kb on + strand, within IAI46_02805at 604.471 kb on - strand, within IAI46_02805at 604.604 kb on - strand, within IAI46_02805at 604.604 kb on - strand, within IAI46_02805at 604.615 kb on + strand, within IAI46_02805at 604.697 kb on - strandat 604.727 kb on + strandat 604.727 kb on + strandat 604.728 kb on - strandat 604.728 kb on - strandat 604.738 kb on + strandat 604.739 kb on - strandat 604.739 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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601,616 - +0.6
601,616 - +0.1
601,639 + +0.5
601,639 + -0.8
601,639 + +0.6
601,710 + +0.2
601,711 - +0.9
601,736 - -0.1
601,771 + +0.1
601,811 + IAI46_02795 0.10 -0.3
601,812 - IAI46_02795 0.10 +0.5
601,812 - IAI46_02795 0.10 -0.8
601,963 - IAI46_02795 0.28 +0.2
601,963 - IAI46_02795 0.28 -0.4
602,114 + IAI46_02795 0.46 -0.2
602,115 - IAI46_02795 0.46 +0.7
602,133 + IAI46_02795 0.48 +1.0
602,134 - IAI46_02795 0.48 -0.1
602,135 + IAI46_02795 0.48 +0.9
602,135 + IAI46_02795 0.48 -0.3
602,135 + IAI46_02795 0.48 -0.7
602,135 + IAI46_02795 0.48 -0.4
602,136 - IAI46_02795 0.49 +0.7
602,136 - IAI46_02795 0.49 +0.0
602,136 - IAI46_02795 0.49 +1.4
602,136 - IAI46_02795 0.49 +0.5
602,136 - IAI46_02795 0.49 +0.7
602,225 + IAI46_02795 0.59 +0.2
602,225 + IAI46_02795 0.59 +0.5
602,400 + IAI46_02795 0.80 -0.4
602,401 - IAI46_02795 0.80 -0.4
602,414 + IAI46_02795 0.81 +0.5
602,414 + IAI46_02795 0.81 +0.1
602,415 - IAI46_02795 0.82 -0.1
602,415 - IAI46_02795 0.82 -0.1
602,561 - -1.1
602,596 + -0.9
602,617 + -0.0
602,617 + +0.1
602,678 + +0.7
602,690 + +0.8
602,690 + +0.1
602,690 + -0.7
602,690 + +0.2
602,690 + +0.1
602,691 - -0.3
602,744 - IAI46_02800 0.12 +0.6
602,861 - IAI46_02800 0.22 +0.9
603,052 + IAI46_02800 0.37 -0.4
603,143 + IAI46_02800 0.44 +0.9
603,143 + IAI46_02800 0.44 +1.4
603,144 - IAI46_02800 0.44 +0.1
603,144 - IAI46_02800 0.44 +1.1
603,144 - IAI46_02800 0.44 -0.2
603,144 - IAI46_02800 0.44 -1.6
603,502 + IAI46_02800 0.72 +0.3
603,541 - IAI46_02800 0.75 +0.4
603,611 + IAI46_02800 0.80 -0.4
603,611 + IAI46_02800 0.80 +0.7
603,611 + IAI46_02800 0.80 +0.8
603,612 - IAI46_02800 0.80 +0.2
603,659 + IAI46_02800 0.84 +0.1
603,686 + IAI46_02800 0.86 +0.0
603,687 - IAI46_02800 0.86 -0.5
603,687 - IAI46_02800 0.86 +0.8
603,687 - IAI46_02800 0.86 +0.5
603,688 + IAI46_02800 0.86 +0.4
603,785 + -2.3
603,785 + -0.3
603,785 + +0.4
603,785 + -0.2
603,785 + +0.4
603,786 - +0.2
603,788 - +0.5
603,845 + -1.1
603,904 + +0.2
603,904 + +0.2
603,904 + -0.1
603,905 - +0.4
603,914 - -0.7
603,914 - -0.4
604,285 + IAI46_02805 0.47 -0.4
604,286 - IAI46_02805 0.47 +0.3
604,352 - IAI46_02805 0.55 -0.9
604,361 + IAI46_02805 0.56 +0.5
604,362 - IAI46_02805 0.56 +1.8
604,470 + IAI46_02805 0.69 -0.7
604,470 + IAI46_02805 0.69 -0.4
604,471 - IAI46_02805 0.69 +1.7
604,604 - IAI46_02805 0.84 +0.8
604,604 - IAI46_02805 0.84 +0.7
604,615 + IAI46_02805 0.85 -1.5
604,697 - +0.5
604,727 + +1.1
604,727 + -0.3
604,728 - +0.4
604,728 - +0.3
604,738 + -0.4
604,739 - +0.8
604,739 - +0.3

Or see this region's nucleotide sequence