Experiment: Nickel (II) chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_02640 and IAI46_02645 are separated by 16 nucleotides IAI46_02645 and IAI46_02650 are separated by 259 nucleotides
IAI46_02640: IAI46_02640 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 569,505 to 571,013
_02640
IAI46_02645: IAI46_02645 - aspartate aminotransferase family protein, at 571,030 to 572,370
_02645
IAI46_02650: IAI46_02650 - LysR family transcriptional regulator, at 572,630 to 573,559
_02650
Position (kb) 571
572
573 Strain fitness (log2 ratio) -2
-1
0
1
2 at 570.032 kb on - strand, within IAI46_02640 at 570.319 kb on + strand, within IAI46_02640 at 570.319 kb on + strand, within IAI46_02640 at 570.319 kb on + strand, within IAI46_02640 at 570.320 kb on - strand, within IAI46_02640 at 570.320 kb on - strand, within IAI46_02640 at 570.320 kb on - strand, within IAI46_02640 at 570.320 kb on - strand, within IAI46_02640 at 570.320 kb on - strand, within IAI46_02640 at 570.341 kb on + strand, within IAI46_02640 at 570.467 kb on + strand, within IAI46_02640 at 570.467 kb on + strand, within IAI46_02640 at 570.469 kb on + strand, within IAI46_02640 at 570.469 kb on + strand, within IAI46_02640 at 570.469 kb on + strand, within IAI46_02640 at 570.469 kb on + strand, within IAI46_02640 at 570.470 kb on - strand, within IAI46_02640 at 570.470 kb on - strand, within IAI46_02640 at 570.470 kb on - strand, within IAI46_02640 at 570.470 kb on - strand, within IAI46_02640 at 570.470 kb on - strand, within IAI46_02640 at 570.470 kb on - strand, within IAI46_02640 at 570.679 kb on + strand, within IAI46_02640 at 570.679 kb on + strand, within IAI46_02640 at 570.680 kb on - strand, within IAI46_02640 at 570.680 kb on - strand, within IAI46_02640 at 570.680 kb on - strand, within IAI46_02640 at 570.689 kb on - strand, within IAI46_02640 at 570.696 kb on - strand, within IAI46_02640 at 570.696 kb on - strand, within IAI46_02640 at 570.696 kb on - strand, within IAI46_02640 at 570.831 kb on + strand, within IAI46_02640 at 570.859 kb on + strand, within IAI46_02640 at 570.892 kb on - strand at 570.912 kb on + strand at 570.912 kb on + strand at 570.912 kb on + strand at 570.949 kb on + strand at 571.028 kb on + strand at 571.029 kb on - strand at 571.029 kb on - strand at 571.031 kb on + strand at 571.142 kb on + strand at 571.273 kb on + strand, within IAI46_02645 at 571.273 kb on + strand, within IAI46_02645 at 571.274 kb on - strand, within IAI46_02645 at 571.298 kb on + strand, within IAI46_02645 at 571.347 kb on + strand, within IAI46_02645 at 571.348 kb on - strand, within IAI46_02645 at 571.394 kb on + strand, within IAI46_02645 at 571.400 kb on + strand, within IAI46_02645 at 571.457 kb on + strand, within IAI46_02645 at 571.474 kb on + strand, within IAI46_02645 at 571.474 kb on + strand, within IAI46_02645 at 571.475 kb on - strand, within IAI46_02645 at 571.522 kb on - strand, within IAI46_02645 at 571.618 kb on - strand, within IAI46_02645 at 571.618 kb on - strand, within IAI46_02645 at 571.618 kb on - strand, within IAI46_02645 at 571.670 kb on - strand, within IAI46_02645 at 571.863 kb on + strand, within IAI46_02645 at 571.864 kb on - strand, within IAI46_02645 at 571.905 kb on + strand, within IAI46_02645 at 571.916 kb on + strand, within IAI46_02645 at 571.935 kb on + strand, within IAI46_02645 at 572.036 kb on + strand, within IAI46_02645 at 572.036 kb on + strand, within IAI46_02645 at 572.036 kb on + strand, within IAI46_02645 at 572.037 kb on - strand, within IAI46_02645 at 572.089 kb on + strand, within IAI46_02645 at 572.089 kb on + strand, within IAI46_02645 at 572.090 kb on - strand, within IAI46_02645 at 572.121 kb on - strand, within IAI46_02645 at 572.238 kb on + strand at 572.238 kb on + strand at 572.239 kb on - strand at 572.239 kb on - strand at 572.240 kb on + strand at 572.241 kb on - strand at 572.243 kb on + strand at 572.244 kb on - strand at 572.263 kb on + strand at 572.263 kb on + strand at 572.264 kb on - strand at 572.324 kb on - strand at 572.391 kb on + strand at 572.391 kb on + strand at 572.391 kb on + strand at 572.392 kb on - strand at 572.392 kb on - strand at 572.392 kb on - strand at 572.392 kb on - strand at 572.392 kb on - strand at 572.392 kb on - strand at 572.395 kb on + strand at 572.395 kb on + strand at 572.395 kb on + strand at 572.401 kb on + strand at 572.401 kb on + strand at 572.401 kb on + strand at 572.405 kb on + strand at 572.406 kb on - strand at 572.406 kb on - strand at 572.409 kb on + strand at 572.409 kb on + strand at 572.409 kb on + strand at 572.410 kb on - strand at 572.410 kb on - strand at 572.441 kb on + strand at 572.469 kb on - strand at 572.469 kb on - strand at 572.469 kb on - strand at 572.476 kb on + strand at 572.517 kb on - strand at 572.519 kb on - strand at 572.519 kb on - strand at 572.519 kb on - strand at 572.519 kb on - strand at 572.526 kb on - strand at 572.526 kb on - strand at 572.533 kb on - strand at 572.533 kb on - strand at 572.534 kb on + strand at 572.534 kb on + strand at 572.538 kb on + strand at 572.538 kb on + strand at 572.538 kb on + strand at 572.539 kb on - strand at 572.572 kb on + strand at 572.573 kb on - strand at 572.590 kb on + strand at 572.590 kb on + strand at 572.606 kb on - strand at 572.618 kb on - strand at 572.618 kb on - strand at 572.621 kb on + strand at 572.629 kb on + strand at 572.695 kb on - strand at 572.698 kb on + strand at 572.749 kb on + strand, within IAI46_02650 at 572.749 kb on + strand, within IAI46_02650 at 572.750 kb on - strand, within IAI46_02650 at 572.776 kb on + strand, within IAI46_02650 at 572.776 kb on + strand, within IAI46_02650 at 572.862 kb on + strand, within IAI46_02650 at 572.862 kb on + strand, within IAI46_02650 at 572.862 kb on + strand, within IAI46_02650 at 572.863 kb on - strand, within IAI46_02650 at 572.863 kb on - strand, within IAI46_02650 at 572.863 kb on - strand, within IAI46_02650 at 572.864 kb on + strand, within IAI46_02650 at 572.864 kb on + strand, within IAI46_02650 at 572.865 kb on - strand, within IAI46_02650 at 572.865 kb on - strand, within IAI46_02650 at 572.865 kb on - strand, within IAI46_02650 at 572.865 kb on - strand, within IAI46_02650 at 572.865 kb on - strand, within IAI46_02650 at 573.016 kb on - strand, within IAI46_02650 at 573.054 kb on - strand, within IAI46_02650 at 573.070 kb on + strand, within IAI46_02650 at 573.070 kb on + strand, within IAI46_02650 at 573.116 kb on - strand, within IAI46_02650 at 573.144 kb on + strand, within IAI46_02650 at 573.144 kb on + strand, within IAI46_02650 at 573.144 kb on + strand, within IAI46_02650 at 573.149 kb on + strand, within IAI46_02650 at 573.151 kb on + strand, within IAI46_02650 at 573.159 kb on + strand, within IAI46_02650 at 573.180 kb on + strand, within IAI46_02650 at 573.180 kb on + strand, within IAI46_02650 at 573.180 kb on + strand, within IAI46_02650 at 573.180 kb on + strand, within IAI46_02650 at 573.180 kb on + strand, within IAI46_02650 at 573.180 kb on + strand, within IAI46_02650 at 573.180 kb on + strand, within IAI46_02650 at 573.181 kb on - strand, within IAI46_02650 at 573.182 kb on + strand, within IAI46_02650 at 573.182 kb on + strand, within IAI46_02650 at 573.183 kb on - strand, within IAI46_02650 at 573.183 kb on - strand, within IAI46_02650 at 573.183 kb on - strand, within IAI46_02650 at 573.225 kb on + strand, within IAI46_02650 at 573.225 kb on + strand, within IAI46_02650 at 573.229 kb on + strand, within IAI46_02650 at 573.230 kb on - strand, within IAI46_02650 at 573.230 kb on - strand, within IAI46_02650 at 573.268 kb on - strand, within IAI46_02650 at 573.272 kb on + strand, within IAI46_02650 at 573.273 kb on - strand, within IAI46_02650 at 573.312 kb on + strand, within IAI46_02650 at 573.312 kb on + strand, within IAI46_02650 at 573.313 kb on - strand, within IAI46_02650 at 573.313 kb on - strand, within IAI46_02650 at 573.313 kb on - strand, within IAI46_02650 at 573.313 kb on - strand, within IAI46_02650 at 573.358 kb on - strand, within IAI46_02650
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic remove 570,032 - IAI46_02640 0.35 +0.5 570,319 + IAI46_02640 0.54 +0.3 570,319 + IAI46_02640 0.54 +0.4 570,319 + IAI46_02640 0.54 -0.5 570,320 - IAI46_02640 0.54 -0.5 570,320 - IAI46_02640 0.54 +1.6 570,320 - IAI46_02640 0.54 +0.2 570,320 - IAI46_02640 0.54 +0.5 570,320 - IAI46_02640 0.54 +0.4 570,341 + IAI46_02640 0.55 +0.5 570,467 + IAI46_02640 0.64 +0.6 570,467 + IAI46_02640 0.64 +0.4 570,469 + IAI46_02640 0.64 +0.1 570,469 + IAI46_02640 0.64 -0.6 570,469 + IAI46_02640 0.64 -0.1 570,469 + IAI46_02640 0.64 +0.6 570,470 - IAI46_02640 0.64 +1.0 570,470 - IAI46_02640 0.64 +0.3 570,470 - IAI46_02640 0.64 -0.2 570,470 - IAI46_02640 0.64 +0.6 570,470 - IAI46_02640 0.64 +0.0 570,470 - IAI46_02640 0.64 +0.2 570,679 + IAI46_02640 0.78 +0.3 570,679 + IAI46_02640 0.78 +0.9 570,680 - IAI46_02640 0.78 +0.2 570,680 - IAI46_02640 0.78 -1.3 570,680 - IAI46_02640 0.78 -0.8 570,689 - IAI46_02640 0.78 +0.8 570,696 - IAI46_02640 0.79 +0.4 570,696 - IAI46_02640 0.79 +0.2 570,696 - IAI46_02640 0.79 +0.1 570,831 + IAI46_02640 0.88 -0.4 570,859 + IAI46_02640 0.90 -0.2 570,892 - -1.1 570,912 + +0.8 570,912 + +0.8 570,912 + +0.1 570,949 + +0.1 571,028 + -0.1 571,029 - -1.1 571,029 - -0.0 571,031 + +0.3 571,142 + +0.6 571,273 + IAI46_02645 0.18 -0.3 571,273 + IAI46_02645 0.18 -0.7 571,274 - IAI46_02645 0.18 -0.1 571,298 + IAI46_02645 0.20 -0.4 571,347 + IAI46_02645 0.24 -0.7 571,348 - IAI46_02645 0.24 +0.3 571,394 + IAI46_02645 0.27 -0.3 571,400 + IAI46_02645 0.28 +1.1 571,457 + IAI46_02645 0.32 +1.4 571,474 + IAI46_02645 0.33 -0.0 571,474 + IAI46_02645 0.33 -0.1 571,475 - IAI46_02645 0.33 -0.4 571,522 - IAI46_02645 0.37 +1.0 571,618 - IAI46_02645 0.44 +0.8 571,618 - IAI46_02645 0.44 +0.6 571,618 - IAI46_02645 0.44 -0.3 571,670 - IAI46_02645 0.48 +0.1 571,863 + IAI46_02645 0.62 +0.5 571,864 - IAI46_02645 0.62 +1.0 571,905 + IAI46_02645 0.65 -0.6 571,916 + IAI46_02645 0.66 +0.2 571,935 + IAI46_02645 0.67 +0.7 572,036 + IAI46_02645 0.75 -0.8 572,036 + IAI46_02645 0.75 -0.7 572,036 + IAI46_02645 0.75 -0.3 572,037 - IAI46_02645 0.75 -1.6 572,089 + IAI46_02645 0.79 +0.8 572,089 + IAI46_02645 0.79 +0.9 572,090 - IAI46_02645 0.79 -0.7 572,121 - IAI46_02645 0.81 -0.5 572,238 + +0.3 572,238 + +1.1 572,239 - +0.3 572,239 - +0.8 572,240 + -0.2 572,241 - +0.0 572,243 + +0.9 572,244 - -0.4 572,263 + +1.6 572,263 + +0.5 572,264 - +0.4 572,324 - -0.6 572,391 + -0.8 572,391 + +0.3 572,391 + -0.0 572,392 - -1.1 572,392 - -1.2 572,392 - +1.8 572,392 - +0.9 572,392 - -0.7 572,392 - +0.3 572,395 + +0.5 572,395 + -1.4 572,395 + +0.4 572,401 + +0.6 572,401 + -0.6 572,401 + +0.7 572,405 + -0.2 572,406 - +0.5 572,406 - -0.3 572,409 + +1.3 572,409 + +0.3 572,409 + -0.6 572,410 - +0.1 572,410 - -0.7 572,441 + +0.3 572,469 - +1.2 572,469 - -0.2 572,469 - -2.0 572,476 + -0.1 572,517 - +0.8 572,519 - -0.5 572,519 - +1.1 572,519 - +0.2 572,519 - +0.0 572,526 - +0.7 572,526 - +1.3 572,533 - +1.1 572,533 - +0.3 572,534 + +0.3 572,534 + +0.6 572,538 + -0.7 572,538 + +0.5 572,538 + +0.6 572,539 - +0.3 572,572 + -0.5 572,573 - +0.7 572,590 + +0.3 572,590 + -0.2 572,606 - +0.6 572,618 - -0.5 572,618 - -0.1 572,621 + -0.2 572,629 + +0.1 572,695 - -0.6 572,698 + +0.5 572,749 + IAI46_02650 0.13 +0.5 572,749 + IAI46_02650 0.13 +0.2 572,750 - IAI46_02650 0.13 +0.6 572,776 + IAI46_02650 0.16 -0.2 572,776 + IAI46_02650 0.16 -0.1 572,862 + IAI46_02650 0.25 -0.6 572,862 + IAI46_02650 0.25 -0.1 572,862 + IAI46_02650 0.25 -0.0 572,863 - IAI46_02650 0.25 +0.5 572,863 - IAI46_02650 0.25 +1.3 572,863 - IAI46_02650 0.25 +1.2 572,864 + IAI46_02650 0.25 -0.1 572,864 + IAI46_02650 0.25 +1.0 572,865 - IAI46_02650 0.25 +0.9 572,865 - IAI46_02650 0.25 -0.1 572,865 - IAI46_02650 0.25 -0.2 572,865 - IAI46_02650 0.25 +1.4 572,865 - IAI46_02650 0.25 -1.7 573,016 - IAI46_02650 0.42 +0.2 573,054 - IAI46_02650 0.46 -1.7 573,070 + IAI46_02650 0.47 -0.2 573,070 + IAI46_02650 0.47 -0.3 573,116 - IAI46_02650 0.52 -0.1 573,144 + IAI46_02650 0.55 +0.4 573,144 + IAI46_02650 0.55 +0.8 573,144 + IAI46_02650 0.55 +0.2 573,149 + IAI46_02650 0.56 +0.4 573,151 + IAI46_02650 0.56 +0.7 573,159 + IAI46_02650 0.57 +0.8 573,180 + IAI46_02650 0.59 -0.4 573,180 + IAI46_02650 0.59 -0.3 573,180 + IAI46_02650 0.59 +0.1 573,180 + IAI46_02650 0.59 +1.0 573,180 + IAI46_02650 0.59 +0.3 573,180 + IAI46_02650 0.59 -0.6 573,180 + IAI46_02650 0.59 +0.4 573,181 - IAI46_02650 0.59 +0.5 573,182 + IAI46_02650 0.59 +0.0 573,182 + IAI46_02650 0.59 -0.2 573,183 - IAI46_02650 0.59 -1.0 573,183 - IAI46_02650 0.59 +0.3 573,183 - IAI46_02650 0.59 +0.0 573,225 + IAI46_02650 0.64 -0.3 573,225 + IAI46_02650 0.64 +0.5 573,229 + IAI46_02650 0.64 -0.3 573,230 - IAI46_02650 0.65 +0.7 573,230 - IAI46_02650 0.65 -0.5 573,268 - IAI46_02650 0.69 +0.5 573,272 + IAI46_02650 0.69 -1.0 573,273 - IAI46_02650 0.69 +0.2 573,312 + IAI46_02650 0.73 +0.3 573,312 + IAI46_02650 0.73 -0.7 573,313 - IAI46_02650 0.73 +0.7 573,313 - IAI46_02650 0.73 -0.2 573,313 - IAI46_02650 0.73 +0.8 573,313 - IAI46_02650 0.73 +0.8 573,358 - IAI46_02650 0.78 -0.5
Or see this region's nucleotide sequence