Strain Fitness in Serratia liquefaciens MT49 around IAI46_02545

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02540 and IAI46_02545 are separated by 12 nucleotidesIAI46_02545 and IAI46_02550 are separated by 67 nucleotides IAI46_02540: IAI46_02540 - GTPase, at 547,662 to 548,624 _02540 IAI46_02545: IAI46_02545 - YbdD/YjiX family protein, at 548,637 to 548,840 _02545 IAI46_02550: IAI46_02550 - carbon starvation protein A, at 548,908 to 551,088 _02550 Position (kb) 548 549Strain fitness (log2 ratio) -2 -1 0 1 2at 547.658 kb on - strandat 547.663 kb on + strandat 547.664 kb on - strandat 547.664 kb on - strandat 547.711 kb on - strandat 547.780 kb on + strand, within IAI46_02540at 547.780 kb on + strand, within IAI46_02540at 547.780 kb on + strand, within IAI46_02540at 547.780 kb on + strand, within IAI46_02540at 547.780 kb on + strand, within IAI46_02540at 547.781 kb on - strand, within IAI46_02540at 547.781 kb on - strand, within IAI46_02540at 547.792 kb on - strand, within IAI46_02540at 547.804 kb on - strand, within IAI46_02540at 547.844 kb on + strand, within IAI46_02540at 547.845 kb on - strand, within IAI46_02540at 547.845 kb on - strand, within IAI46_02540at 547.846 kb on + strand, within IAI46_02540at 547.847 kb on - strand, within IAI46_02540at 547.847 kb on - strand, within IAI46_02540at 547.847 kb on - strand, within IAI46_02540at 547.867 kb on + strand, within IAI46_02540at 547.930 kb on + strand, within IAI46_02540at 547.931 kb on - strand, within IAI46_02540at 547.949 kb on + strand, within IAI46_02540at 547.950 kb on - strand, within IAI46_02540at 548.075 kb on + strand, within IAI46_02540at 548.076 kb on - strand, within IAI46_02540at 548.077 kb on + strand, within IAI46_02540at 548.373 kb on + strand, within IAI46_02540at 548.373 kb on + strand, within IAI46_02540at 548.556 kb on - strandat 548.562 kb on + strandat 548.562 kb on + strandat 548.562 kb on + strandat 548.635 kb on + strandat 548.635 kb on + strandat 548.635 kb on + strandat 548.638 kb on + strandat 548.639 kb on - strandat 548.711 kb on - strand, within IAI46_02545at 548.711 kb on - strand, within IAI46_02545at 548.711 kb on - strand, within IAI46_02545at 548.711 kb on - strand, within IAI46_02545at 548.711 kb on - strand, within IAI46_02545at 548.711 kb on - strand, within IAI46_02545at 548.711 kb on - strand, within IAI46_02545at 548.711 kb on - strand, within IAI46_02545at 548.711 kb on - strand, within IAI46_02545at 548.758 kb on + strand, within IAI46_02545at 548.758 kb on + strand, within IAI46_02545at 548.758 kb on + strand, within IAI46_02545at 548.759 kb on - strand, within IAI46_02545at 548.759 kb on - strand, within IAI46_02545at 548.762 kb on + strand, within IAI46_02545at 548.762 kb on + strand, within IAI46_02545at 548.763 kb on - strand, within IAI46_02545at 548.763 kb on - strand, within IAI46_02545at 548.809 kb on + strand, within IAI46_02545at 548.899 kb on - strandat 548.944 kb on + strandat 548.944 kb on + strandat 548.944 kb on + strandat 548.982 kb on - strandat 549.015 kb on + strandat 549.059 kb on + strandat 549.059 kb on + strandat 549.059 kb on + strandat 549.059 kb on + strandat 549.060 kb on - strandat 549.060 kb on - strandat 549.101 kb on + strandat 549.102 kb on - strandat 549.117 kb on + strandat 549.130 kb on - strand, within IAI46_02550at 549.183 kb on - strand, within IAI46_02550at 549.183 kb on - strand, within IAI46_02550at 549.183 kb on - strand, within IAI46_02550at 549.183 kb on - strand, within IAI46_02550at 549.251 kb on + strand, within IAI46_02550at 549.252 kb on - strand, within IAI46_02550at 549.302 kb on + strand, within IAI46_02550at 549.302 kb on + strand, within IAI46_02550at 549.303 kb on - strand, within IAI46_02550at 549.303 kb on - strand, within IAI46_02550at 549.321 kb on + strand, within IAI46_02550at 549.322 kb on - strand, within IAI46_02550at 549.434 kb on + strand, within IAI46_02550at 549.434 kb on + strand, within IAI46_02550at 549.434 kb on + strand, within IAI46_02550at 549.434 kb on + strand, within IAI46_02550at 549.435 kb on - strand, within IAI46_02550at 549.435 kb on - strand, within IAI46_02550at 549.435 kb on - strand, within IAI46_02550at 549.546 kb on + strand, within IAI46_02550at 549.546 kb on + strand, within IAI46_02550at 549.687 kb on + strand, within IAI46_02550at 549.687 kb on + strand, within IAI46_02550at 549.687 kb on + strand, within IAI46_02550at 549.688 kb on - strand, within IAI46_02550

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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547,658 - +0.1
547,663 + -1.2
547,664 - +0.6
547,664 - +0.3
547,711 - +0.5
547,780 + IAI46_02540 0.12 -0.3
547,780 + IAI46_02540 0.12 +1.1
547,780 + IAI46_02540 0.12 -0.0
547,780 + IAI46_02540 0.12 -0.6
547,780 + IAI46_02540 0.12 +0.1
547,781 - IAI46_02540 0.12 +0.9
547,781 - IAI46_02540 0.12 +0.0
547,792 - IAI46_02540 0.13 +0.7
547,804 - IAI46_02540 0.15 +0.1
547,844 + IAI46_02540 0.19 +0.2
547,845 - IAI46_02540 0.19 -0.0
547,845 - IAI46_02540 0.19 -0.2
547,846 + IAI46_02540 0.19 -0.9
547,847 - IAI46_02540 0.19 -0.7
547,847 - IAI46_02540 0.19 -0.3
547,847 - IAI46_02540 0.19 -0.1
547,867 + IAI46_02540 0.21 -0.5
547,930 + IAI46_02540 0.28 +0.3
547,931 - IAI46_02540 0.28 +0.1
547,949 + IAI46_02540 0.30 +0.2
547,950 - IAI46_02540 0.30 +0.4
548,075 + IAI46_02540 0.43 -1.7
548,076 - IAI46_02540 0.43 -0.4
548,077 + IAI46_02540 0.43 +0.3
548,373 + IAI46_02540 0.74 +0.1
548,373 + IAI46_02540 0.74 -0.3
548,556 - -0.3
548,562 + -1.4
548,562 + +0.4
548,562 + -0.3
548,635 + +0.5
548,635 + +0.9
548,635 + -0.3
548,638 + -0.1
548,639 - +0.5
548,711 - IAI46_02545 0.36 +1.0
548,711 - IAI46_02545 0.36 +0.0
548,711 - IAI46_02545 0.36 -0.6
548,711 - IAI46_02545 0.36 +0.9
548,711 - IAI46_02545 0.36 +0.2
548,711 - IAI46_02545 0.36 -0.1
548,711 - IAI46_02545 0.36 +0.2
548,711 - IAI46_02545 0.36 -0.1
548,711 - IAI46_02545 0.36 -0.5
548,758 + IAI46_02545 0.59 +0.2
548,758 + IAI46_02545 0.59 +1.4
548,758 + IAI46_02545 0.59 +0.9
548,759 - IAI46_02545 0.60 -0.1
548,759 - IAI46_02545 0.60 -0.5
548,762 + IAI46_02545 0.61 +0.3
548,762 + IAI46_02545 0.61 +0.2
548,763 - IAI46_02545 0.62 -1.1
548,763 - IAI46_02545 0.62 +0.9
548,809 + IAI46_02545 0.84 +0.1
548,899 - +2.0
548,944 + +0.2
548,944 + +0.2
548,944 + +0.4
548,982 - +0.1
549,015 + +0.9
549,059 + +0.9
549,059 + +1.1
549,059 + -0.6
549,059 + +0.3
549,060 - +0.6
549,060 - +2.6
549,101 + -1.1
549,102 - -0.6
549,117 + +0.8
549,130 - IAI46_02550 0.10 +0.4
549,183 - IAI46_02550 0.13 -0.3
549,183 - IAI46_02550 0.13 -1.3
549,183 - IAI46_02550 0.13 -0.9
549,183 - IAI46_02550 0.13 +1.4
549,251 + IAI46_02550 0.16 +0.1
549,252 - IAI46_02550 0.16 -0.3
549,302 + IAI46_02550 0.18 -0.1
549,302 + IAI46_02550 0.18 -0.2
549,303 - IAI46_02550 0.18 +0.6
549,303 - IAI46_02550 0.18 +0.5
549,321 + IAI46_02550 0.19 +0.7
549,322 - IAI46_02550 0.19 -2.0
549,434 + IAI46_02550 0.24 +0.1
549,434 + IAI46_02550 0.24 -0.3
549,434 + IAI46_02550 0.24 +0.7
549,434 + IAI46_02550 0.24 +0.0
549,435 - IAI46_02550 0.24 -1.0
549,435 - IAI46_02550 0.24 +0.6
549,435 - IAI46_02550 0.24 +0.4
549,546 + IAI46_02550 0.29 -0.1
549,546 + IAI46_02550 0.29 -1.3
549,687 + IAI46_02550 0.36 +0.2
549,687 + IAI46_02550 0.36 +0.0
549,687 + IAI46_02550 0.36 +0.2
549,688 - IAI46_02550 0.36 +0.6

Or see this region's nucleotide sequence