Experiment: Nickel (II) chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_01650 and IAI46_01655 are separated by 500 nucleotides IAI46_01655 and IAI46_01660 are separated by 59 nucleotides
IAI46_01650: IAI46_01650 - adenylosuccinate synthase, at 361,100 to 362,398
_01650
IAI46_01655: IAI46_01655 - nitric oxide-sensing transcriptional repressor NsrR, at 362,899 to 363,324
_01655
IAI46_01660: IAI46_01660 - ribonuclease R, at 363,384 to 365,870
_01660
Position (kb) 362
363
364 Strain fitness (log2 ratio) -1
0
1
2
3 at 362.216 kb on + strand, within IAI46_01650 at 362.294 kb on + strand at 362.396 kb on + strand at 362.396 kb on + strand at 362.397 kb on - strand at 362.416 kb on + strand at 362.416 kb on + strand at 362.416 kb on + strand at 362.416 kb on + strand at 362.416 kb on + strand at 362.417 kb on - strand at 362.417 kb on - strand at 362.417 kb on - strand at 362.417 kb on - strand at 362.417 kb on - strand at 362.417 kb on - strand at 362.517 kb on - strand at 362.573 kb on + strand at 362.573 kb on + strand at 362.574 kb on - strand at 362.598 kb on + strand at 362.598 kb on + strand at 362.599 kb on - strand at 362.599 kb on - strand at 362.607 kb on + strand at 362.607 kb on + strand at 362.608 kb on - strand at 362.608 kb on - strand at 362.608 kb on - strand at 362.608 kb on - strand at 362.666 kb on + strand at 362.666 kb on + strand at 362.666 kb on + strand at 362.667 kb on - strand at 362.667 kb on - strand at 362.667 kb on - strand at 362.670 kb on - strand at 362.685 kb on + strand at 362.686 kb on - strand at 362.789 kb on + strand at 362.794 kb on - strand at 362.794 kb on - strand at 362.821 kb on + strand at 362.822 kb on - strand at 362.831 kb on + strand at 362.835 kb on + strand at 362.835 kb on + strand at 362.894 kb on + strand at 362.895 kb on - strand at 362.895 kb on - strand at 362.895 kb on - strand at 362.895 kb on - strand at 362.923 kb on + strand at 362.944 kb on + strand, within IAI46_01655 at 362.944 kb on + strand, within IAI46_01655 at 362.945 kb on - strand, within IAI46_01655 at 362.945 kb on - strand, within IAI46_01655 at 363.001 kb on + strand, within IAI46_01655 at 363.021 kb on + strand, within IAI46_01655 at 363.021 kb on + strand, within IAI46_01655 at 363.022 kb on - strand, within IAI46_01655 at 363.026 kb on + strand, within IAI46_01655 at 363.026 kb on + strand, within IAI46_01655 at 363.026 kb on + strand, within IAI46_01655 at 363.027 kb on - strand, within IAI46_01655 at 363.027 kb on - strand, within IAI46_01655 at 363.165 kb on + strand, within IAI46_01655 at 363.177 kb on + strand, within IAI46_01655 at 363.192 kb on - strand, within IAI46_01655 at 363.233 kb on + strand, within IAI46_01655 at 363.234 kb on - strand, within IAI46_01655 at 363.258 kb on + strand, within IAI46_01655 at 363.276 kb on + strand, within IAI46_01655 at 363.301 kb on + strand at 363.301 kb on + strand at 363.302 kb on - strand at 363.308 kb on + strand at 363.308 kb on + strand at 363.308 kb on + strand at 363.309 kb on - strand at 363.309 kb on - strand at 363.309 kb on - strand at 363.309 kb on - strand at 363.423 kb on + strand at 363.708 kb on + strand, within IAI46_01660 at 363.708 kb on + strand, within IAI46_01660 at 363.708 kb on + strand, within IAI46_01660 at 363.708 kb on + strand, within IAI46_01660 at 363.708 kb on + strand, within IAI46_01660 at 363.709 kb on - strand, within IAI46_01660 at 363.953 kb on + strand, within IAI46_01660 at 363.953 kb on + strand, within IAI46_01660 at 364.054 kb on + strand, within IAI46_01660 at 364.055 kb on - strand, within IAI46_01660 at 364.058 kb on + strand, within IAI46_01660 at 364.233 kb on + strand, within IAI46_01660 at 364.233 kb on + strand, within IAI46_01660 at 364.234 kb on - strand, within IAI46_01660 at 364.234 kb on - strand, within IAI46_01660 at 364.294 kb on - strand, within IAI46_01660 at 364.294 kb on - strand, within IAI46_01660 at 364.296 kb on + strand, within IAI46_01660 at 364.296 kb on + strand, within IAI46_01660
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic remove 362,216 + IAI46_01650 0.86 -0.6 362,294 + -0.4 362,396 + +1.1 362,396 + +0.4 362,397 - -1.6 362,416 + -1.7 362,416 + +0.4 362,416 + +0.5 362,416 + -1.0 362,416 + +0.2 362,417 - -0.4 362,417 - -0.8 362,417 - +0.3 362,417 - -0.0 362,417 - -0.5 362,417 - -0.7 362,517 - -1.2 362,573 + +0.2 362,573 + +0.2 362,574 - -1.0 362,598 + +0.4 362,598 + -1.4 362,599 - +0.2 362,599 - -1.3 362,607 + -0.2 362,607 + +0.1 362,608 - +0.1 362,608 - -1.3 362,608 - -0.0 362,608 - +0.5 362,666 + +0.6 362,666 + +0.0 362,666 + -0.7 362,667 - +0.7 362,667 - +0.7 362,667 - +0.3 362,670 - +0.5 362,685 + +0.1 362,686 - -0.1 362,789 + +0.7 362,794 - +0.1 362,794 - -0.8 362,821 + -0.4 362,822 - +1.3 362,831 + +0.4 362,835 + -0.6 362,835 + -0.4 362,894 + -1.2 362,895 - -0.6 362,895 - -0.2 362,895 - +0.9 362,895 - +0.1 362,923 + +1.5 362,944 + IAI46_01655 0.11 +0.6 362,944 + IAI46_01655 0.11 -0.2 362,945 - IAI46_01655 0.11 +0.6 362,945 - IAI46_01655 0.11 -0.2 363,001 + IAI46_01655 0.24 +1.9 363,021 + IAI46_01655 0.29 +2.9 363,021 + IAI46_01655 0.29 +0.1 363,022 - IAI46_01655 0.29 +1.9 363,026 + IAI46_01655 0.30 +0.1 363,026 + IAI46_01655 0.30 +0.4 363,026 + IAI46_01655 0.30 +0.4 363,027 - IAI46_01655 0.30 -0.1 363,027 - IAI46_01655 0.30 -0.8 363,165 + IAI46_01655 0.62 +0.3 363,177 + IAI46_01655 0.65 +0.2 363,192 - IAI46_01655 0.69 -1.2 363,233 + IAI46_01655 0.78 -0.1 363,234 - IAI46_01655 0.79 +0.8 363,258 + IAI46_01655 0.84 -0.6 363,276 + IAI46_01655 0.88 -0.6 363,301 + -0.1 363,301 + +0.6 363,302 - +0.6 363,308 + +1.0 363,308 + +0.3 363,308 + +0.4 363,309 - -0.7 363,309 - -1.0 363,309 - +1.3 363,309 - -0.3 363,423 + -0.1 363,708 + IAI46_01660 0.13 -0.1 363,708 + IAI46_01660 0.13 +0.8 363,708 + IAI46_01660 0.13 -0.1 363,708 + IAI46_01660 0.13 -0.2 363,708 + IAI46_01660 0.13 -0.0 363,709 - IAI46_01660 0.13 -0.1 363,953 + IAI46_01660 0.23 -0.1 363,953 + IAI46_01660 0.23 -0.8 364,054 + IAI46_01660 0.27 -0.6 364,055 - IAI46_01660 0.27 -0.2 364,058 + IAI46_01660 0.27 +0.1 364,233 + IAI46_01660 0.34 +0.4 364,233 + IAI46_01660 0.34 +0.1 364,234 - IAI46_01660 0.34 +0.4 364,234 - IAI46_01660 0.34 -0.2 364,294 - IAI46_01660 0.37 +0.2 364,294 - IAI46_01660 0.37 +0.4 364,296 + IAI46_01660 0.37 -1.3 364,296 + IAI46_01660 0.37 +0.3
Or see this region's nucleotide sequence