Strain Fitness in Serratia liquefaciens MT49 around IAI46_01365

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01360 and IAI46_01365 are separated by 48 nucleotidesIAI46_01365 and IAI46_01370 are separated by 650 nucleotides IAI46_01360: IAI46_01360 - phosphoribosylamine--glycine ligase, at 297,074 to 298,357 _01360 IAI46_01365: IAI46_01365 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 298,406 to 299,995 _01365 IAI46_01370: IAI46_01370 - 16S ribosomal RNA, at 300,646 to 302,190 _01370 Position (kb) 298 299 300Strain fitness (log2 ratio) -3 -2 -1 0 1at 297.546 kb on + strand, within IAI46_01360at 297.561 kb on + strand, within IAI46_01360at 297.561 kb on + strand, within IAI46_01360at 297.561 kb on + strand, within IAI46_01360at 297.562 kb on - strand, within IAI46_01360at 297.562 kb on - strand, within IAI46_01360at 297.562 kb on - strand, within IAI46_01360at 297.562 kb on - strand, within IAI46_01360at 297.562 kb on - strand, within IAI46_01360at 297.562 kb on - strand, within IAI46_01360at 297.569 kb on - strand, within IAI46_01360at 297.569 kb on - strand, within IAI46_01360at 297.604 kb on + strand, within IAI46_01360at 297.604 kb on + strand, within IAI46_01360at 297.605 kb on - strand, within IAI46_01360at 297.660 kb on + strand, within IAI46_01360at 297.660 kb on + strand, within IAI46_01360at 297.660 kb on + strand, within IAI46_01360at 297.661 kb on - strand, within IAI46_01360at 297.661 kb on - strand, within IAI46_01360at 297.670 kb on + strand, within IAI46_01360at 297.741 kb on - strand, within IAI46_01360at 297.766 kb on + strand, within IAI46_01360at 297.946 kb on + strand, within IAI46_01360at 297.946 kb on + strand, within IAI46_01360at 297.947 kb on - strand, within IAI46_01360at 297.957 kb on + strand, within IAI46_01360at 297.958 kb on - strand, within IAI46_01360at 297.958 kb on - strand, within IAI46_01360at 297.958 kb on - strand, within IAI46_01360at 298.009 kb on + strand, within IAI46_01360at 298.010 kb on - strand, within IAI46_01360at 298.055 kb on + strand, within IAI46_01360at 298.202 kb on - strand, within IAI46_01360at 298.228 kb on + strand, within IAI46_01360at 298.229 kb on - strandat 298.229 kb on - strandat 298.273 kb on - strandat 298.346 kb on + strandat 298.426 kb on + strandat 298.427 kb on - strandat 298.667 kb on + strand, within IAI46_01365at 298.667 kb on + strand, within IAI46_01365at 298.667 kb on + strand, within IAI46_01365at 298.668 kb on - strand, within IAI46_01365at 298.668 kb on - strand, within IAI46_01365at 298.668 kb on - strand, within IAI46_01365at 298.695 kb on + strand, within IAI46_01365at 298.715 kb on - strand, within IAI46_01365at 298.715 kb on - strand, within IAI46_01365at 298.715 kb on - strand, within IAI46_01365at 298.768 kb on + strand, within IAI46_01365at 298.768 kb on + strand, within IAI46_01365at 298.768 kb on + strand, within IAI46_01365at 298.769 kb on - strand, within IAI46_01365at 298.787 kb on + strand, within IAI46_01365at 298.788 kb on - strand, within IAI46_01365at 298.788 kb on - strand, within IAI46_01365at 298.957 kb on + strand, within IAI46_01365at 298.957 kb on + strand, within IAI46_01365at 298.958 kb on - strand, within IAI46_01365at 298.958 kb on - strand, within IAI46_01365at 298.993 kb on + strand, within IAI46_01365at 299.074 kb on - strand, within IAI46_01365at 299.074 kb on - strand, within IAI46_01365at 299.085 kb on + strand, within IAI46_01365at 299.086 kb on - strand, within IAI46_01365at 299.098 kb on + strand, within IAI46_01365at 299.211 kb on + strand, within IAI46_01365at 299.211 kb on + strand, within IAI46_01365at 299.276 kb on + strand, within IAI46_01365at 299.276 kb on + strand, within IAI46_01365at 299.276 kb on + strand, within IAI46_01365at 299.277 kb on - strand, within IAI46_01365at 299.277 kb on - strand, within IAI46_01365at 299.277 kb on - strand, within IAI46_01365at 299.277 kb on - strand, within IAI46_01365at 299.279 kb on - strand, within IAI46_01365at 299.279 kb on - strand, within IAI46_01365at 299.280 kb on + strand, within IAI46_01365at 299.280 kb on + strand, within IAI46_01365at 299.280 kb on + strand, within IAI46_01365at 299.280 kb on + strand, within IAI46_01365at 299.281 kb on - strand, within IAI46_01365at 299.281 kb on - strand, within IAI46_01365at 299.281 kb on - strand, within IAI46_01365at 299.281 kb on - strand, within IAI46_01365at 299.281 kb on - strand, within IAI46_01365at 299.313 kb on + strand, within IAI46_01365at 299.337 kb on + strand, within IAI46_01365at 299.337 kb on + strand, within IAI46_01365at 299.337 kb on + strand, within IAI46_01365at 299.337 kb on + strand, within IAI46_01365at 299.337 kb on + strand, within IAI46_01365at 299.337 kb on + strand, within IAI46_01365at 299.338 kb on - strand, within IAI46_01365at 299.338 kb on - strand, within IAI46_01365at 299.338 kb on - strand, within IAI46_01365at 299.341 kb on + strand, within IAI46_01365at 299.341 kb on + strand, within IAI46_01365at 299.341 kb on + strand, within IAI46_01365at 299.341 kb on + strand, within IAI46_01365at 299.342 kb on - strand, within IAI46_01365at 299.418 kb on + strand, within IAI46_01365at 299.419 kb on - strand, within IAI46_01365at 299.419 kb on - strand, within IAI46_01365at 299.490 kb on + strand, within IAI46_01365at 299.490 kb on + strand, within IAI46_01365at 299.490 kb on + strand, within IAI46_01365at 299.512 kb on + strand, within IAI46_01365at 299.531 kb on - strand, within IAI46_01365at 299.572 kb on + strand, within IAI46_01365at 299.572 kb on + strand, within IAI46_01365at 299.627 kb on + strand, within IAI46_01365at 299.627 kb on + strand, within IAI46_01365at 299.687 kb on + strand, within IAI46_01365at 299.687 kb on + strand, within IAI46_01365at 299.792 kb on + strand, within IAI46_01365at 299.849 kb on + strandat 299.849 kb on + strandat 299.850 kb on - strandat 300.025 kb on + strandat 300.056 kb on - strandat 300.056 kb on - strandat 300.056 kb on - strandat 300.056 kb on - strandat 300.056 kb on - strandat 300.056 kb on - strandat 300.056 kb on - strandat 300.056 kb on - strandat 300.062 kb on + strandat 300.063 kb on - strandat 300.063 kb on - strandat 300.063 kb on - strandat 300.064 kb on + strandat 300.064 kb on + strandat 300.065 kb on - strandat 300.065 kb on - strandat 300.065 kb on - strandat 300.065 kb on - strandat 300.085 kb on - strandat 300.085 kb on - strandat 300.085 kb on - strandat 300.085 kb on - strandat 300.086 kb on + strandat 300.086 kb on + strandat 300.086 kb on + strandat 300.115 kb on - strandat 300.233 kb on + strandat 300.234 kb on - strandat 300.234 kb on - strandat 300.235 kb on + strandat 300.235 kb on + strandat 300.236 kb on - strandat 300.286 kb on + strandat 300.287 kb on - strandat 300.315 kb on - strandat 300.317 kb on - strandat 300.317 kb on - strandat 300.317 kb on - strandat 300.317 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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297,546 + IAI46_01360 0.37 -2.8
297,561 + IAI46_01360 0.38 -0.8
297,561 + IAI46_01360 0.38 -1.8
297,561 + IAI46_01360 0.38 -2.2
297,562 - IAI46_01360 0.38 -3.7
297,562 - IAI46_01360 0.38 -1.1
297,562 - IAI46_01360 0.38 -2.7
297,562 - IAI46_01360 0.38 -0.7
297,562 - IAI46_01360 0.38 -1.1
297,562 - IAI46_01360 0.38 -1.4
297,569 - IAI46_01360 0.39 +0.1
297,569 - IAI46_01360 0.39 -0.9
297,604 + IAI46_01360 0.41 -0.8
297,604 + IAI46_01360 0.41 +0.6
297,605 - IAI46_01360 0.41 -1.5
297,660 + IAI46_01360 0.46 -1.0
297,660 + IAI46_01360 0.46 -0.1
297,660 + IAI46_01360 0.46 -0.8
297,661 - IAI46_01360 0.46 -2.4
297,661 - IAI46_01360 0.46 -1.8
297,670 + IAI46_01360 0.46 -0.2
297,741 - IAI46_01360 0.52 -3.3
297,766 + IAI46_01360 0.54 -2.4
297,946 + IAI46_01360 0.68 -0.9
297,946 + IAI46_01360 0.68 -2.7
297,947 - IAI46_01360 0.68 -1.3
297,957 + IAI46_01360 0.69 -0.7
297,958 - IAI46_01360 0.69 -1.4
297,958 - IAI46_01360 0.69 -2.5
297,958 - IAI46_01360 0.69 -2.4
298,009 + IAI46_01360 0.73 -1.2
298,010 - IAI46_01360 0.73 -1.1
298,055 + IAI46_01360 0.76 -1.1
298,202 - IAI46_01360 0.88 -0.5
298,228 + IAI46_01360 0.90 -0.5
298,229 - -2.6
298,229 - -0.1
298,273 - -2.4
298,346 + -1.9
298,426 + -0.8
298,427 - -1.8
298,667 + IAI46_01365 0.16 -3.4
298,667 + IAI46_01365 0.16 -1.4
298,667 + IAI46_01365 0.16 -1.7
298,668 - IAI46_01365 0.16 -2.1
298,668 - IAI46_01365 0.16 +0.3
298,668 - IAI46_01365 0.16 -0.7
298,695 + IAI46_01365 0.18 -2.1
298,715 - IAI46_01365 0.19 -1.3
298,715 - IAI46_01365 0.19 -2.1
298,715 - IAI46_01365 0.19 -2.5
298,768 + IAI46_01365 0.23 -2.4
298,768 + IAI46_01365 0.23 -0.9
298,768 + IAI46_01365 0.23 -2.0
298,769 - IAI46_01365 0.23 -1.7
298,787 + IAI46_01365 0.24 -2.6
298,788 - IAI46_01365 0.24 -2.7
298,788 - IAI46_01365 0.24 -1.8
298,957 + IAI46_01365 0.35 -1.1
298,957 + IAI46_01365 0.35 -2.8
298,958 - IAI46_01365 0.35 -1.3
298,958 - IAI46_01365 0.35 -2.0
298,993 + IAI46_01365 0.37 -0.5
299,074 - IAI46_01365 0.42 -0.8
299,074 - IAI46_01365 0.42 -1.2
299,085 + IAI46_01365 0.43 -0.7
299,086 - IAI46_01365 0.43 -1.9
299,098 + IAI46_01365 0.44 +0.3
299,211 + IAI46_01365 0.51 -3.4
299,211 + IAI46_01365 0.51 -2.3
299,276 + IAI46_01365 0.55 +0.1
299,276 + IAI46_01365 0.55 -1.9
299,276 + IAI46_01365 0.55 -2.3
299,277 - IAI46_01365 0.55 -1.6
299,277 - IAI46_01365 0.55 -1.1
299,277 - IAI46_01365 0.55 -2.1
299,277 - IAI46_01365 0.55 +0.6
299,279 - IAI46_01365 0.55 -1.1
299,279 - IAI46_01365 0.55 -1.3
299,280 + IAI46_01365 0.55 -2.0
299,280 + IAI46_01365 0.55 -1.4
299,280 + IAI46_01365 0.55 +0.1
299,280 + IAI46_01365 0.55 -1.9
299,281 - IAI46_01365 0.55 -1.5
299,281 - IAI46_01365 0.55 -0.7
299,281 - IAI46_01365 0.55 -1.5
299,281 - IAI46_01365 0.55 -0.2
299,281 - IAI46_01365 0.55 -2.1
299,313 + IAI46_01365 0.57 -1.6
299,337 + IAI46_01365 0.59 -0.8
299,337 + IAI46_01365 0.59 -1.4
299,337 + IAI46_01365 0.59 -0.4
299,337 + IAI46_01365 0.59 -1.3
299,337 + IAI46_01365 0.59 +0.6
299,337 + IAI46_01365 0.59 -0.8
299,338 - IAI46_01365 0.59 -1.1
299,338 - IAI46_01365 0.59 -0.2
299,338 - IAI46_01365 0.59 -3.0
299,341 + IAI46_01365 0.59 -2.0
299,341 + IAI46_01365 0.59 -0.5
299,341 + IAI46_01365 0.59 -1.9
299,341 + IAI46_01365 0.59 -1.6
299,342 - IAI46_01365 0.59 -3.6
299,418 + IAI46_01365 0.64 -2.3
299,419 - IAI46_01365 0.64 -2.1
299,419 - IAI46_01365 0.64 -3.3
299,490 + IAI46_01365 0.68 -2.5
299,490 + IAI46_01365 0.68 -0.1
299,490 + IAI46_01365 0.68 -3.0
299,512 + IAI46_01365 0.70 -0.3
299,531 - IAI46_01365 0.71 -2.2
299,572 + IAI46_01365 0.73 -1.9
299,572 + IAI46_01365 0.73 -0.9
299,627 + IAI46_01365 0.77 -1.4
299,627 + IAI46_01365 0.77 -2.6
299,687 + IAI46_01365 0.81 -2.6
299,687 + IAI46_01365 0.81 -0.8
299,792 + IAI46_01365 0.87 -0.8
299,849 + -1.8
299,849 + -1.3
299,850 - -0.2
300,025 + -0.9
300,056 - +0.9
300,056 - +1.3
300,056 - -0.5
300,056 - -0.6
300,056 - +0.1
300,056 - +0.3
300,056 - -0.3
300,056 - -1.2
300,062 + -0.5
300,063 - -0.4
300,063 - +0.4
300,063 - -0.4
300,064 + -1.7
300,064 + -1.1
300,065 - -0.2
300,065 - +0.2
300,065 - -0.6
300,065 - +0.1
300,085 - +0.1
300,085 - -0.8
300,085 - +0.6
300,085 - +0.4
300,086 + -0.4
300,086 + -1.6
300,086 + -2.2
300,115 - +0.2
300,233 + -0.5
300,234 - +0.1
300,234 - +0.2
300,235 + +0.4
300,235 + -0.1
300,236 - +0.2
300,286 + +0.3
300,287 - +0.2
300,315 - +0.3
300,317 - -0.4
300,317 - +0.1
300,317 - -0.6
300,317 - -1.3

Or see this region's nucleotide sequence