Strain Fitness in Serratia liquefaciens MT49 around IAI46_01035

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01030 and IAI46_01035 are separated by 90 nucleotidesIAI46_01035 and IAI46_01040 are separated by 92 nucleotides IAI46_01030: IAI46_01030 - HTH-type transcriptional regulator MetR, at 229,142 to 230,092 _01030 IAI46_01035: IAI46_01035 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase, at 230,183 to 232,474 _01035 IAI46_01040: IAI46_01040 - dienelactone hydrolase family protein, at 232,567 to 233,403 _01040 Position (kb) 230 231 232 233Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 229.436 kb on - strand, within IAI46_01030at 229.604 kb on + strand, within IAI46_01030at 229.630 kb on - strand, within IAI46_01030at 229.877 kb on + strand, within IAI46_01030at 229.878 kb on - strand, within IAI46_01030at 229.878 kb on - strand, within IAI46_01030at 229.878 kb on - strand, within IAI46_01030at 229.878 kb on - strand, within IAI46_01030at 229.878 kb on - strand, within IAI46_01030at 229.878 kb on - strand, within IAI46_01030at 229.919 kb on - strand, within IAI46_01030at 230.072 kb on + strandat 230.072 kb on + strandat 230.073 kb on - strandat 230.073 kb on - strandat 230.118 kb on + strandat 230.135 kb on + strandat 230.136 kb on - strandat 230.138 kb on + strandat 230.138 kb on + strandat 230.138 kb on + strandat 230.138 kb on + strandat 230.138 kb on + strandat 230.143 kb on + strandat 230.144 kb on - strandat 230.144 kb on - strandat 230.154 kb on + strandat 230.164 kb on + strandat 230.164 kb on + strandat 230.165 kb on - strandat 230.191 kb on + strandat 230.191 kb on + strandat 230.192 kb on - strandat 230.241 kb on + strandat 230.242 kb on - strandat 230.396 kb on + strandat 230.397 kb on - strandat 230.397 kb on - strandat 230.406 kb on + strandat 230.406 kb on + strandat 230.406 kb on + strandat 230.406 kb on + strandat 230.406 kb on + strandat 230.406 kb on + strandat 230.406 kb on + strandat 230.407 kb on - strandat 230.407 kb on - strandat 230.407 kb on - strandat 230.484 kb on + strand, within IAI46_01035at 230.484 kb on + strand, within IAI46_01035at 230.485 kb on - strand, within IAI46_01035at 230.485 kb on - strand, within IAI46_01035at 230.485 kb on - strand, within IAI46_01035at 230.564 kb on + strand, within IAI46_01035at 230.564 kb on + strand, within IAI46_01035at 230.565 kb on - strand, within IAI46_01035at 230.565 kb on - strand, within IAI46_01035at 230.565 kb on - strand, within IAI46_01035at 230.570 kb on + strand, within IAI46_01035at 230.570 kb on + strand, within IAI46_01035at 230.570 kb on + strand, within IAI46_01035at 230.570 kb on + strand, within IAI46_01035at 230.570 kb on + strand, within IAI46_01035at 230.571 kb on - strand, within IAI46_01035at 230.571 kb on - strand, within IAI46_01035at 230.571 kb on - strand, within IAI46_01035at 230.696 kb on + strand, within IAI46_01035at 230.696 kb on + strand, within IAI46_01035at 230.696 kb on + strand, within IAI46_01035at 230.696 kb on + strand, within IAI46_01035at 230.696 kb on + strand, within IAI46_01035at 230.696 kb on + strand, within IAI46_01035at 230.696 kb on + strand, within IAI46_01035at 230.697 kb on - strand, within IAI46_01035at 230.697 kb on - strand, within IAI46_01035at 230.697 kb on - strand, within IAI46_01035at 230.697 kb on - strand, within IAI46_01035at 230.769 kb on - strand, within IAI46_01035at 230.814 kb on + strand, within IAI46_01035at 230.904 kb on + strand, within IAI46_01035at 230.905 kb on - strand, within IAI46_01035at 230.924 kb on + strand, within IAI46_01035at 230.924 kb on + strand, within IAI46_01035at 230.924 kb on + strand, within IAI46_01035at 230.925 kb on - strand, within IAI46_01035at 230.925 kb on - strand, within IAI46_01035at 230.925 kb on - strand, within IAI46_01035at 230.944 kb on + strand, within IAI46_01035at 231.326 kb on + strand, within IAI46_01035at 231.327 kb on - strand, within IAI46_01035at 231.328 kb on + strand, within IAI46_01035at 231.381 kb on + strand, within IAI46_01035at 231.382 kb on - strand, within IAI46_01035at 231.434 kb on + strand, within IAI46_01035at 231.469 kb on + strand, within IAI46_01035at 231.498 kb on + strand, within IAI46_01035at 231.571 kb on + strand, within IAI46_01035at 231.571 kb on + strand, within IAI46_01035at 231.572 kb on - strand, within IAI46_01035at 231.572 kb on - strand, within IAI46_01035at 231.572 kb on - strand, within IAI46_01035at 231.572 kb on - strand, within IAI46_01035at 231.575 kb on + strand, within IAI46_01035at 231.576 kb on - strand, within IAI46_01035at 231.740 kb on + strand, within IAI46_01035at 231.740 kb on + strand, within IAI46_01035at 231.782 kb on - strand, within IAI46_01035at 231.856 kb on + strand, within IAI46_01035at 231.856 kb on + strand, within IAI46_01035at 231.856 kb on + strand, within IAI46_01035at 232.136 kb on + strand, within IAI46_01035at 232.137 kb on - strand, within IAI46_01035at 232.137 kb on - strand, within IAI46_01035at 232.137 kb on - strand, within IAI46_01035at 232.137 kb on - strand, within IAI46_01035at 232.137 kb on - strand, within IAI46_01035at 232.157 kb on - strand, within IAI46_01035at 232.157 kb on - strand, within IAI46_01035at 232.157 kb on - strand, within IAI46_01035at 232.157 kb on - strand, within IAI46_01035at 232.216 kb on + strand, within IAI46_01035at 232.217 kb on - strand, within IAI46_01035at 232.217 kb on - strand, within IAI46_01035at 232.277 kb on + strandat 232.277 kb on + strandat 232.277 kb on + strandat 232.277 kb on + strandat 232.278 kb on - strandat 232.278 kb on - strandat 232.278 kb on - strandat 232.278 kb on - strandat 232.278 kb on - strandat 232.475 kb on + strandat 232.476 kb on - strandat 232.555 kb on + strandat 232.568 kb on + strandat 232.569 kb on - strandat 232.569 kb on - strandat 232.569 kb on - strandat 232.647 kb on - strandat 232.784 kb on + strand, within IAI46_01040at 232.875 kb on - strand, within IAI46_01040at 232.895 kb on - strand, within IAI46_01040at 232.916 kb on + strand, within IAI46_01040at 232.916 kb on + strand, within IAI46_01040at 232.917 kb on - strand, within IAI46_01040at 232.926 kb on + strand, within IAI46_01040at 232.927 kb on - strand, within IAI46_01040at 232.927 kb on - strand, within IAI46_01040at 232.929 kb on + strand, within IAI46_01040at 232.929 kb on + strand, within IAI46_01040at 232.929 kb on + strand, within IAI46_01040at 233.081 kb on + strand, within IAI46_01040at 233.108 kb on + strand, within IAI46_01040at 233.108 kb on + strand, within IAI46_01040at 233.108 kb on + strand, within IAI46_01040at 233.108 kb on + strand, within IAI46_01040at 233.169 kb on + strand, within IAI46_01040at 233.170 kb on - strand, within IAI46_01040at 233.188 kb on + strand, within IAI46_01040at 233.188 kb on + strand, within IAI46_01040at 233.188 kb on + strand, within IAI46_01040at 233.197 kb on + strand, within IAI46_01040at 233.197 kb on + strand, within IAI46_01040at 233.198 kb on - strand, within IAI46_01040at 233.247 kb on + strand, within IAI46_01040at 233.248 kb on - strand, within IAI46_01040at 233.249 kb on + strand, within IAI46_01040at 233.249 kb on + strand, within IAI46_01040at 233.249 kb on + strand, within IAI46_01040at 233.249 kb on + strand, within IAI46_01040at 233.249 kb on + strand, within IAI46_01040at 233.250 kb on - strand, within IAI46_01040at 233.250 kb on - strand, within IAI46_01040at 233.325 kb on + strandat 233.325 kb on + strandat 233.325 kb on + strandat 233.325 kb on + strandat 233.326 kb on - strandat 233.377 kb on + strandat 233.377 kb on + strandat 233.377 kb on + strandat 233.378 kb on - strandat 233.378 kb on - strandat 233.378 kb on - strandat 233.378 kb on - strandat 233.424 kb on + strandat 233.444 kb on - strandat 233.447 kb on + strandat 233.447 kb on + strandat 233.448 kb on - strandat 233.448 kb on - strandat 233.448 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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229,436 - IAI46_01030 0.31 -1.1
229,604 + IAI46_01030 0.49 -0.9
229,630 - IAI46_01030 0.51 -2.3
229,877 + IAI46_01030 0.77 -0.8
229,878 - IAI46_01030 0.77 -0.3
229,878 - IAI46_01030 0.77 -0.7
229,878 - IAI46_01030 0.77 -0.1
229,878 - IAI46_01030 0.77 -1.5
229,878 - IAI46_01030 0.77 -0.3
229,878 - IAI46_01030 0.77 -1.2
229,919 - IAI46_01030 0.82 -0.3
230,072 + -2.0
230,072 + +0.5
230,073 - -1.1
230,073 - -0.6
230,118 + -0.4
230,135 + -1.2
230,136 - +0.7
230,138 + +0.4
230,138 + -0.0
230,138 + +0.1
230,138 + +0.2
230,138 + +0.9
230,143 + -0.6
230,144 - -0.3
230,144 - -1.0
230,154 + -0.0
230,164 + -0.7
230,164 + +0.6
230,165 - -1.2
230,191 + +1.4
230,191 + -0.8
230,192 - +1.0
230,241 + -0.0
230,242 - -2.0
230,396 + +0.0
230,397 - +0.1
230,397 - -2.2
230,406 + -0.8
230,406 + -0.1
230,406 + -0.2
230,406 + -0.4
230,406 + +0.8
230,406 + +0.5
230,406 + -1.1
230,407 - -0.4
230,407 - +0.3
230,407 - +0.4
230,484 + IAI46_01035 0.13 -1.5
230,484 + IAI46_01035 0.13 -0.4
230,485 - IAI46_01035 0.13 -0.4
230,485 - IAI46_01035 0.13 -0.4
230,485 - IAI46_01035 0.13 +0.0
230,564 + IAI46_01035 0.17 -1.3
230,564 + IAI46_01035 0.17 +1.7
230,565 - IAI46_01035 0.17 -0.8
230,565 - IAI46_01035 0.17 -1.2
230,565 - IAI46_01035 0.17 -0.5
230,570 + IAI46_01035 0.17 -0.0
230,570 + IAI46_01035 0.17 -0.1
230,570 + IAI46_01035 0.17 -1.2
230,570 + IAI46_01035 0.17 -1.1
230,570 + IAI46_01035 0.17 +0.6
230,571 - IAI46_01035 0.17 -0.4
230,571 - IAI46_01035 0.17 -1.1
230,571 - IAI46_01035 0.17 +0.5
230,696 + IAI46_01035 0.22 +0.7
230,696 + IAI46_01035 0.22 -0.1
230,696 + IAI46_01035 0.22 -1.7
230,696 + IAI46_01035 0.22 -1.2
230,696 + IAI46_01035 0.22 -0.3
230,696 + IAI46_01035 0.22 -1.5
230,696 + IAI46_01035 0.22 -0.3
230,697 - IAI46_01035 0.22 -0.7
230,697 - IAI46_01035 0.22 -0.8
230,697 - IAI46_01035 0.22 +0.0
230,697 - IAI46_01035 0.22 -0.3
230,769 - IAI46_01035 0.26 -3.8
230,814 + IAI46_01035 0.28 +0.3
230,904 + IAI46_01035 0.31 +0.8
230,905 - IAI46_01035 0.32 -2.9
230,924 + IAI46_01035 0.32 -1.2
230,924 + IAI46_01035 0.32 -0.3
230,924 + IAI46_01035 0.32 -0.8
230,925 - IAI46_01035 0.32 +1.3
230,925 - IAI46_01035 0.32 -0.1
230,925 - IAI46_01035 0.32 -0.3
230,944 + IAI46_01035 0.33 -0.5
231,326 + IAI46_01035 0.50 -1.5
231,327 - IAI46_01035 0.50 -0.9
231,328 + IAI46_01035 0.50 -1.5
231,381 + IAI46_01035 0.52 +0.3
231,382 - IAI46_01035 0.52 +0.0
231,434 + IAI46_01035 0.55 +0.2
231,469 + IAI46_01035 0.56 -0.4
231,498 + IAI46_01035 0.57 -1.9
231,571 + IAI46_01035 0.61 -1.1
231,571 + IAI46_01035 0.61 -1.7
231,572 - IAI46_01035 0.61 +0.8
231,572 - IAI46_01035 0.61 -0.4
231,572 - IAI46_01035 0.61 -1.1
231,572 - IAI46_01035 0.61 -0.4
231,575 + IAI46_01035 0.61 +0.2
231,576 - IAI46_01035 0.61 -1.4
231,740 + IAI46_01035 0.68 +0.3
231,740 + IAI46_01035 0.68 -0.1
231,782 - IAI46_01035 0.70 -0.9
231,856 + IAI46_01035 0.73 -1.7
231,856 + IAI46_01035 0.73 -0.5
231,856 + IAI46_01035 0.73 +0.2
232,136 + IAI46_01035 0.85 -0.0
232,137 - IAI46_01035 0.85 -2.2
232,137 - IAI46_01035 0.85 -1.2
232,137 - IAI46_01035 0.85 +0.1
232,137 - IAI46_01035 0.85 -1.3
232,137 - IAI46_01035 0.85 -0.8
232,157 - IAI46_01035 0.86 -1.0
232,157 - IAI46_01035 0.86 +0.0
232,157 - IAI46_01035 0.86 -0.5
232,157 - IAI46_01035 0.86 +0.6
232,216 + IAI46_01035 0.89 -0.1
232,217 - IAI46_01035 0.89 -0.3
232,217 - IAI46_01035 0.89 -1.5
232,277 + +0.2
232,277 + -1.4
232,277 + +0.9
232,277 + -0.4
232,278 - +0.2
232,278 - -0.4
232,278 - -2.6
232,278 - +0.3
232,278 - -1.2
232,475 + -1.2
232,476 - +0.0
232,555 + +0.7
232,568 + +0.5
232,569 - -1.5
232,569 - +0.5
232,569 - -1.6
232,647 - +0.2
232,784 + IAI46_01040 0.26 -0.9
232,875 - IAI46_01040 0.37 +0.4
232,895 - IAI46_01040 0.39 -0.3
232,916 + IAI46_01040 0.42 -1.2
232,916 + IAI46_01040 0.42 -0.2
232,917 - IAI46_01040 0.42 -0.9
232,926 + IAI46_01040 0.43 +0.8
232,927 - IAI46_01040 0.43 +0.3
232,927 - IAI46_01040 0.43 -0.4
232,929 + IAI46_01040 0.43 -0.1
232,929 + IAI46_01040 0.43 +1.7
232,929 + IAI46_01040 0.43 +0.4
233,081 + IAI46_01040 0.61 +1.3
233,108 + IAI46_01040 0.65 +0.8
233,108 + IAI46_01040 0.65 +0.4
233,108 + IAI46_01040 0.65 +0.2
233,108 + IAI46_01040 0.65 +0.1
233,169 + IAI46_01040 0.72 -0.3
233,170 - IAI46_01040 0.72 +0.2
233,188 + IAI46_01040 0.74 -1.4
233,188 + IAI46_01040 0.74 -0.9
233,188 + IAI46_01040 0.74 -0.1
233,197 + IAI46_01040 0.75 +0.2
233,197 + IAI46_01040 0.75 -0.7
233,198 - IAI46_01040 0.75 -1.2
233,247 + IAI46_01040 0.81 -0.4
233,248 - IAI46_01040 0.81 +0.3
233,249 + IAI46_01040 0.81 -0.1
233,249 + IAI46_01040 0.81 +0.5
233,249 + IAI46_01040 0.81 +0.7
233,249 + IAI46_01040 0.81 +0.2
233,249 + IAI46_01040 0.81 -1.6
233,250 - IAI46_01040 0.82 -0.6
233,250 - IAI46_01040 0.82 +0.4
233,325 + +0.4
233,325 + -0.6
233,325 + +0.9
233,325 + -0.1
233,326 - +0.6
233,377 + -0.0
233,377 + -0.2
233,377 + -1.8
233,378 - -0.1
233,378 - -1.5
233,378 - +0.6
233,378 - +1.5
233,424 + +0.1
233,444 - -0.5
233,447 + +0.3
233,447 + +0.6
233,448 - +0.6
233,448 - +0.2
233,448 - -0.1

Or see this region's nucleotide sequence