Strain Fitness in Serratia liquefaciens MT49 around IAI46_00325

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00320 and IAI46_00325 are separated by 76 nucleotidesIAI46_00325 and IAI46_00330 are separated by 102 nucleotidesIAI46_00330 and IAI46_00335 are separated by 31 nucleotides IAI46_00320: IAI46_00320 - cyanate transporter, at 73,956 to 75,155 _00320 IAI46_00325: IAI46_00325 - esterase-like activity of phytase family protein, at 75,232 to 76,578 _00325 IAI46_00330: IAI46_00330 - tRNA-Sec, at 76,681 to 76,775 _00330 IAI46_00335: IAI46_00335 - nucleotidyltransferase domain-containing protein, at 76,807 to 77,551 _00335 Position (kb) 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2at 74.342 kb on + strand, within IAI46_00320at 74.343 kb on - strand, within IAI46_00320at 74.343 kb on - strand, within IAI46_00320at 74.343 kb on - strand, within IAI46_00320at 74.343 kb on - strand, within IAI46_00320at 74.343 kb on - strand, within IAI46_00320at 74.343 kb on - strand, within IAI46_00320at 74.433 kb on - strand, within IAI46_00320at 74.433 kb on - strand, within IAI46_00320at 74.467 kb on - strand, within IAI46_00320at 74.468 kb on + strand, within IAI46_00320at 74.468 kb on + strand, within IAI46_00320at 74.581 kb on + strand, within IAI46_00320at 74.616 kb on + strand, within IAI46_00320at 74.630 kb on + strand, within IAI46_00320at 74.670 kb on + strand, within IAI46_00320at 74.673 kb on + strand, within IAI46_00320at 74.673 kb on + strand, within IAI46_00320at 74.673 kb on + strand, within IAI46_00320at 74.673 kb on + strand, within IAI46_00320at 74.674 kb on - strand, within IAI46_00320at 74.674 kb on - strand, within IAI46_00320at 74.674 kb on - strand, within IAI46_00320at 74.795 kb on - strand, within IAI46_00320at 74.840 kb on + strand, within IAI46_00320at 74.840 kb on + strand, within IAI46_00320at 74.840 kb on + strand, within IAI46_00320at 74.840 kb on + strand, within IAI46_00320at 74.841 kb on - strand, within IAI46_00320at 74.844 kb on + strand, within IAI46_00320at 74.845 kb on - strand, within IAI46_00320at 74.875 kb on + strand, within IAI46_00320at 74.876 kb on - strand, within IAI46_00320at 74.939 kb on + strand, within IAI46_00320at 75.019 kb on - strand, within IAI46_00320at 75.019 kb on - strand, within IAI46_00320at 75.042 kb on + strandat 75.154 kb on - strandat 75.157 kb on - strandat 75.157 kb on - strandat 75.157 kb on - strandat 75.178 kb on + strandat 75.179 kb on - strandat 75.179 kb on - strandat 75.180 kb on + strandat 75.180 kb on + strandat 75.180 kb on + strandat 75.180 kb on + strandat 75.181 kb on - strandat 75.181 kb on - strandat 75.195 kb on + strandat 75.196 kb on - strandat 75.274 kb on - strandat 75.410 kb on - strand, within IAI46_00325at 75.410 kb on - strand, within IAI46_00325at 75.410 kb on - strand, within IAI46_00325at 75.410 kb on - strand, within IAI46_00325at 75.410 kb on - strand, within IAI46_00325at 75.547 kb on + strand, within IAI46_00325at 75.547 kb on + strand, within IAI46_00325at 75.547 kb on + strand, within IAI46_00325at 75.548 kb on - strand, within IAI46_00325at 75.607 kb on + strand, within IAI46_00325at 75.607 kb on + strand, within IAI46_00325at 75.608 kb on - strand, within IAI46_00325at 75.619 kb on + strand, within IAI46_00325at 75.811 kb on + strand, within IAI46_00325at 76.067 kb on - strand, within IAI46_00325at 76.126 kb on + strand, within IAI46_00325at 76.126 kb on + strand, within IAI46_00325at 76.126 kb on + strand, within IAI46_00325at 76.127 kb on - strand, within IAI46_00325at 76.127 kb on - strand, within IAI46_00325at 76.167 kb on + strand, within IAI46_00325at 76.168 kb on - strand, within IAI46_00325at 76.206 kb on + strand, within IAI46_00325at 76.292 kb on + strand, within IAI46_00325at 76.295 kb on - strand, within IAI46_00325at 76.297 kb on - strand, within IAI46_00325at 76.297 kb on - strand, within IAI46_00325at 76.297 kb on - strand, within IAI46_00325at 76.348 kb on + strand, within IAI46_00325at 76.349 kb on - strand, within IAI46_00325at 76.350 kb on + strand, within IAI46_00325at 76.467 kb on + strandat 76.467 kb on + strandat 76.467 kb on + strandat 76.467 kb on + strandat 76.467 kb on + strandat 76.467 kb on + strandat 76.468 kb on - strandat 76.468 kb on - strandat 76.470 kb on + strandat 76.470 kb on + strandat 76.470 kb on + strandat 76.471 kb on - strandat 76.471 kb on - strandat 76.471 kb on - strandat 76.471 kb on - strandat 76.488 kb on + strandat 76.488 kb on + strandat 76.489 kb on - strandat 76.489 kb on - strandat 76.489 kb on - strandat 76.489 kb on - strandat 76.577 kb on - strandat 76.577 kb on - strandat 76.629 kb on - strandat 76.629 kb on - strandat 76.641 kb on - strandat 76.653 kb on - strandat 76.653 kb on - strandat 76.786 kb on + strandat 76.786 kb on + strandat 76.786 kb on + strandat 76.787 kb on - strandat 76.787 kb on - strandat 76.787 kb on - strandat 76.831 kb on - strandat 76.831 kb on - strandat 76.910 kb on - strand, within IAI46_00335at 76.927 kb on + strand, within IAI46_00335at 76.927 kb on + strand, within IAI46_00335at 76.928 kb on - strand, within IAI46_00335at 76.932 kb on + strand, within IAI46_00335at 76.932 kb on + strand, within IAI46_00335at 76.932 kb on + strand, within IAI46_00335at 76.933 kb on - strand, within IAI46_00335at 76.933 kb on - strand, within IAI46_00335at 76.933 kb on - strand, within IAI46_00335at 76.933 kb on - strand, within IAI46_00335at 76.933 kb on - strand, within IAI46_00335at 76.933 kb on - strand, within IAI46_00335at 76.936 kb on + strand, within IAI46_00335at 76.936 kb on + strand, within IAI46_00335at 76.937 kb on - strand, within IAI46_00335at 76.937 kb on - strand, within IAI46_00335at 76.942 kb on + strand, within IAI46_00335at 76.943 kb on - strand, within IAI46_00335at 77.019 kb on + strand, within IAI46_00335at 77.019 kb on + strand, within IAI46_00335at 77.020 kb on - strand, within IAI46_00335at 77.029 kb on + strand, within IAI46_00335at 77.030 kb on - strand, within IAI46_00335at 77.133 kb on - strand, within IAI46_00335at 77.134 kb on + strand, within IAI46_00335at 77.134 kb on + strand, within IAI46_00335at 77.134 kb on + strand, within IAI46_00335at 77.134 kb on + strand, within IAI46_00335at 77.135 kb on - strand, within IAI46_00335at 77.270 kb on + strand, within IAI46_00335at 77.270 kb on + strand, within IAI46_00335at 77.270 kb on + strand, within IAI46_00335at 77.271 kb on - strand, within IAI46_00335at 77.271 kb on - strand, within IAI46_00335at 77.356 kb on + strand, within IAI46_00335at 77.356 kb on + strand, within IAI46_00335at 77.356 kb on + strand, within IAI46_00335at 77.356 kb on + strand, within IAI46_00335at 77.359 kb on + strand, within IAI46_00335at 77.359 kb on + strand, within IAI46_00335at 77.359 kb on + strand, within IAI46_00335at 77.360 kb on - strand, within IAI46_00335at 77.360 kb on - strand, within IAI46_00335at 77.360 kb on - strand, within IAI46_00335at 77.409 kb on - strand, within IAI46_00335at 77.421 kb on + strand, within IAI46_00335at 77.422 kb on - strand, within IAI46_00335at 77.441 kb on - strand, within IAI46_00335at 77.476 kb on + strand, within IAI46_00335at 77.477 kb on - strandat 77.482 kb on + strandat 77.573 kb on + strandat 77.573 kb on + strandat 77.573 kb on + strandat 77.576 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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74,342 + IAI46_00320 0.32 +0.5
74,343 - IAI46_00320 0.32 +0.2
74,343 - IAI46_00320 0.32 -0.4
74,343 - IAI46_00320 0.32 +0.4
74,343 - IAI46_00320 0.32 +0.0
74,343 - IAI46_00320 0.32 +0.2
74,343 - IAI46_00320 0.32 -0.1
74,433 - IAI46_00320 0.40 -0.3
74,433 - IAI46_00320 0.40 +0.9
74,467 - IAI46_00320 0.43 -1.0
74,468 + IAI46_00320 0.43 -0.1
74,468 + IAI46_00320 0.43 -0.0
74,581 + IAI46_00320 0.52 +1.0
74,616 + IAI46_00320 0.55 +0.1
74,630 + IAI46_00320 0.56 -0.6
74,670 + IAI46_00320 0.59 +0.7
74,673 + IAI46_00320 0.60 -0.0
74,673 + IAI46_00320 0.60 -0.1
74,673 + IAI46_00320 0.60 +0.1
74,673 + IAI46_00320 0.60 +0.2
74,674 - IAI46_00320 0.60 -0.7
74,674 - IAI46_00320 0.60 -0.3
74,674 - IAI46_00320 0.60 -0.0
74,795 - IAI46_00320 0.70 +0.1
74,840 + IAI46_00320 0.74 -0.2
74,840 + IAI46_00320 0.74 +0.8
74,840 + IAI46_00320 0.74 +0.1
74,840 + IAI46_00320 0.74 +0.2
74,841 - IAI46_00320 0.74 -0.6
74,844 + IAI46_00320 0.74 +0.1
74,845 - IAI46_00320 0.74 +0.4
74,875 + IAI46_00320 0.77 -0.3
74,876 - IAI46_00320 0.77 -0.1
74,939 + IAI46_00320 0.82 +0.0
75,019 - IAI46_00320 0.89 +0.5
75,019 - IAI46_00320 0.89 -0.4
75,042 + -0.4
75,154 - +0.6
75,157 - +0.1
75,157 - +0.8
75,157 - +0.7
75,178 + -0.7
75,179 - +0.0
75,179 - +0.4
75,180 + -0.1
75,180 + +0.1
75,180 + -0.3
75,180 + +1.4
75,181 - -0.3
75,181 - +0.7
75,195 + +0.6
75,196 - +0.4
75,274 - +0.1
75,410 - IAI46_00325 0.13 +1.7
75,410 - IAI46_00325 0.13 -0.0
75,410 - IAI46_00325 0.13 -0.0
75,410 - IAI46_00325 0.13 -0.6
75,410 - IAI46_00325 0.13 -0.5
75,547 + IAI46_00325 0.23 +0.3
75,547 + IAI46_00325 0.23 +0.1
75,547 + IAI46_00325 0.23 -0.3
75,548 - IAI46_00325 0.23 +0.1
75,607 + IAI46_00325 0.28 -0.3
75,607 + IAI46_00325 0.28 +0.1
75,608 - IAI46_00325 0.28 +0.2
75,619 + IAI46_00325 0.29 -1.1
75,811 + IAI46_00325 0.43 -0.1
76,067 - IAI46_00325 0.62 +0.3
76,126 + IAI46_00325 0.66 +0.3
76,126 + IAI46_00325 0.66 +0.7
76,126 + IAI46_00325 0.66 -0.7
76,127 - IAI46_00325 0.66 +0.1
76,127 - IAI46_00325 0.66 +0.3
76,167 + IAI46_00325 0.69 +0.4
76,168 - IAI46_00325 0.69 +0.5
76,206 + IAI46_00325 0.72 -0.0
76,292 + IAI46_00325 0.79 -2.0
76,295 - IAI46_00325 0.79 +1.6
76,297 - IAI46_00325 0.79 +0.2
76,297 - IAI46_00325 0.79 +0.2
76,297 - IAI46_00325 0.79 +0.6
76,348 + IAI46_00325 0.83 -0.3
76,349 - IAI46_00325 0.83 +0.7
76,350 + IAI46_00325 0.83 +0.8
76,467 + -0.1
76,467 + -0.0
76,467 + +0.1
76,467 + +0.6
76,467 + +1.4
76,467 + +0.7
76,468 - +0.1
76,468 - +0.5
76,470 + +0.5
76,470 + +0.4
76,470 + -0.2
76,471 - +0.4
76,471 - +0.4
76,471 - -0.3
76,471 - +0.9
76,488 + +0.5
76,488 + -0.4
76,489 - +0.4
76,489 - +1.8
76,489 - +0.2
76,489 - +1.2
76,577 - +0.1
76,577 - +0.7
76,629 - +0.4
76,629 - +0.5
76,641 - -0.0
76,653 - +0.6
76,653 - -0.7
76,786 + +0.3
76,786 + +0.7
76,786 + -0.0
76,787 - +0.3
76,787 - +0.1
76,787 - +2.0
76,831 - +0.4
76,831 - -0.5
76,910 - IAI46_00335 0.14 +1.1
76,927 + IAI46_00335 0.16 -0.1
76,927 + IAI46_00335 0.16 +0.8
76,928 - IAI46_00335 0.16 +0.4
76,932 + IAI46_00335 0.17 -0.1
76,932 + IAI46_00335 0.17 -0.4
76,932 + IAI46_00335 0.17 -0.5
76,933 - IAI46_00335 0.17 +1.5
76,933 - IAI46_00335 0.17 +0.6
76,933 - IAI46_00335 0.17 +0.4
76,933 - IAI46_00335 0.17 -0.3
76,933 - IAI46_00335 0.17 +0.5
76,933 - IAI46_00335 0.17 +1.2
76,936 + IAI46_00335 0.17 -0.5
76,936 + IAI46_00335 0.17 +0.3
76,937 - IAI46_00335 0.17 -0.0
76,937 - IAI46_00335 0.17 -0.8
76,942 + IAI46_00335 0.18 -0.6
76,943 - IAI46_00335 0.18 -1.2
77,019 + IAI46_00335 0.28 +1.0
77,019 + IAI46_00335 0.28 +0.1
77,020 - IAI46_00335 0.29 +0.1
77,029 + IAI46_00335 0.30 +0.7
77,030 - IAI46_00335 0.30 +0.9
77,133 - IAI46_00335 0.44 +0.0
77,134 + IAI46_00335 0.44 -0.3
77,134 + IAI46_00335 0.44 +1.1
77,134 + IAI46_00335 0.44 -0.2
77,134 + IAI46_00335 0.44 +0.2
77,135 - IAI46_00335 0.44 +1.4
77,270 + IAI46_00335 0.62 -1.4
77,270 + IAI46_00335 0.62 -0.3
77,270 + IAI46_00335 0.62 -0.4
77,271 - IAI46_00335 0.62 +0.6
77,271 - IAI46_00335 0.62 -0.3
77,356 + IAI46_00335 0.74 +1.0
77,356 + IAI46_00335 0.74 -0.6
77,356 + IAI46_00335 0.74 -0.3
77,356 + IAI46_00335 0.74 +1.3
77,359 + IAI46_00335 0.74 +1.2
77,359 + IAI46_00335 0.74 +0.5
77,359 + IAI46_00335 0.74 -0.3
77,360 - IAI46_00335 0.74 -0.6
77,360 - IAI46_00335 0.74 +0.2
77,360 - IAI46_00335 0.74 -0.9
77,409 - IAI46_00335 0.81 +1.0
77,421 + IAI46_00335 0.82 +0.3
77,422 - IAI46_00335 0.83 +0.2
77,441 - IAI46_00335 0.85 -0.9
77,476 + IAI46_00335 0.90 +1.0
77,477 - +1.0
77,482 + -0.2
77,573 + -1.3
77,573 + +0.8
77,573 + +0.6
77,576 - +0.1

Or see this region's nucleotide sequence