Experiment: Nickel (II) chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00110 and IAI46_00115 are separated by 267 nucleotides IAI46_00115 and IAI46_00120 overlap by 4 nucleotides IAI46_00120 and IAI46_00125 are separated by 197 nucleotides
IAI46_00110: IAI46_00110 - OmpA family lipoprotein, at 23,887 to 24,549
_00110
IAI46_00115: IAI46_00115 - N-acetyltransferase, at 24,817 to 25,251
_00115
IAI46_00120: IAI46_00120 - DNA-3-methyladenine glycosylase I, at 25,248 to 25,814
_00120
IAI46_00125: IAI46_00125 - autotransporter domain-containing protein, at 26,012 to 28,000
_00125
Position (kb) 24
25
26 Strain fitness (log2 ratio) -2
-1
0
1
2 at 23.854 kb on + strand at 23.888 kb on + strand at 23.888 kb on + strand at 23.889 kb on - strand at 23.889 kb on - strand at 24.022 kb on + strand, within IAI46_00110 at 24.098 kb on + strand, within IAI46_00110 at 24.099 kb on - strand, within IAI46_00110 at 24.099 kb on - strand, within IAI46_00110 at 24.234 kb on + strand, within IAI46_00110 at 24.235 kb on - strand, within IAI46_00110 at 24.235 kb on - strand, within IAI46_00110 at 24.286 kb on + strand, within IAI46_00110 at 24.311 kb on + strand, within IAI46_00110 at 24.311 kb on + strand, within IAI46_00110 at 24.311 kb on + strand, within IAI46_00110 at 24.312 kb on - strand, within IAI46_00110 at 24.312 kb on - strand, within IAI46_00110 at 24.312 kb on - strand, within IAI46_00110 at 24.314 kb on + strand, within IAI46_00110 at 24.314 kb on + strand, within IAI46_00110 at 24.315 kb on - strand, within IAI46_00110 at 24.647 kb on + strand at 24.647 kb on + strand at 24.647 kb on + strand at 24.647 kb on + strand at 24.647 kb on + strand at 24.647 kb on + strand at 24.648 kb on - strand at 24.658 kb on + strand at 24.658 kb on + strand at 24.659 kb on - strand at 24.694 kb on + strand at 24.695 kb on - strand at 24.695 kb on - strand at 24.696 kb on + strand at 24.744 kb on + strand at 24.819 kb on - strand at 24.844 kb on + strand at 24.844 kb on + strand at 24.845 kb on - strand at 24.845 kb on - strand at 24.849 kb on + strand at 24.849 kb on + strand at 24.849 kb on + strand at 24.850 kb on - strand at 24.850 kb on - strand at 24.851 kb on + strand at 24.851 kb on + strand at 24.852 kb on - strand at 24.938 kb on + strand, within IAI46_00115 at 24.938 kb on + strand, within IAI46_00115 at 24.938 kb on + strand, within IAI46_00115 at 24.938 kb on + strand, within IAI46_00115 at 24.938 kb on + strand, within IAI46_00115 at 24.939 kb on - strand, within IAI46_00115 at 24.939 kb on - strand, within IAI46_00115 at 24.939 kb on - strand, within IAI46_00115 at 24.939 kb on - strand, within IAI46_00115 at 24.939 kb on - strand, within IAI46_00115 at 24.952 kb on + strand, within IAI46_00115 at 24.953 kb on - strand, within IAI46_00115 at 24.962 kb on + strand, within IAI46_00115 at 24.973 kb on + strand, within IAI46_00115 at 24.973 kb on + strand, within IAI46_00115 at 24.973 kb on + strand, within IAI46_00115 at 25.042 kb on - strand, within IAI46_00115 at 25.094 kb on + strand, within IAI46_00115 at 25.094 kb on + strand, within IAI46_00115 at 25.095 kb on - strand, within IAI46_00115 at 25.121 kb on + strand, within IAI46_00115 at 25.121 kb on + strand, within IAI46_00115 at 25.122 kb on - strand, within IAI46_00115 at 25.122 kb on - strand, within IAI46_00115 at 25.157 kb on + strand, within IAI46_00115 at 25.158 kb on - strand, within IAI46_00115 at 25.213 kb on + strand at 25.224 kb on + strand at 25.224 kb on + strand at 25.224 kb on + strand at 25.224 kb on + strand at 25.225 kb on - strand at 25.313 kb on + strand, within IAI46_00120 at 25.314 kb on - strand, within IAI46_00120 at 25.321 kb on + strand, within IAI46_00120 at 25.642 kb on + strand, within IAI46_00120 at 25.642 kb on + strand, within IAI46_00120 at 25.704 kb on + strand, within IAI46_00120 at 25.705 kb on - strand, within IAI46_00120 at 25.705 kb on - strand, within IAI46_00120 at 25.763 kb on - strand at 25.771 kb on + strand at 25.771 kb on + strand at 25.772 kb on - strand at 25.772 kb on - strand at 25.772 kb on - strand at 25.772 kb on - strand at 25.773 kb on + strand at 25.774 kb on - strand at 25.774 kb on - strand at 25.774 kb on - strand at 25.774 kb on - strand at 25.815 kb on - strand at 25.815 kb on - strand at 25.838 kb on + strand at 25.847 kb on + strand at 25.847 kb on + strand at 25.892 kb on + strand at 25.931 kb on - strand at 25.931 kb on - strand at 25.934 kb on + strand at 25.934 kb on + strand at 25.935 kb on - strand at 25.935 kb on - strand at 25.937 kb on + strand at 25.937 kb on + strand at 25.937 kb on + strand at 25.967 kb on + strand at 26.007 kb on + strand at 26.007 kb on + strand at 26.008 kb on - strand at 26.020 kb on + strand at 26.021 kb on - strand at 26.025 kb on + strand at 26.025 kb on + strand at 26.064 kb on + strand at 26.064 kb on + strand at 26.064 kb on + strand at 26.065 kb on - strand at 26.065 kb on - strand at 26.067 kb on + strand at 26.067 kb on + strand at 26.067 kb on + strand at 26.074 kb on + strand at 26.074 kb on + strand at 26.075 kb on - strand at 26.096 kb on + strand at 26.108 kb on + strand at 26.108 kb on + strand at 26.109 kb on - strand at 26.109 kb on - strand at 26.135 kb on - strand at 26.170 kb on + strand at 26.170 kb on + strand at 26.171 kb on - strand at 26.171 kb on - strand at 26.171 kb on - strand at 26.183 kb on + strand at 26.194 kb on - strand at 26.245 kb on + strand, within IAI46_00125 at 26.245 kb on + strand, within IAI46_00125 at 26.246 kb on - strand, within IAI46_00125 at 26.249 kb on + strand, within IAI46_00125 at 26.250 kb on - strand, within IAI46_00125 at 26.250 kb on - strand, within IAI46_00125
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic remove 23,854 + -0.0 23,888 + -0.4 23,888 + +0.4 23,889 - -0.8 23,889 - -0.5 24,022 + IAI46_00110 0.20 -0.0 24,098 + IAI46_00110 0.32 -0.8 24,099 - IAI46_00110 0.32 +1.0 24,099 - IAI46_00110 0.32 -1.0 24,234 + IAI46_00110 0.52 +0.1 24,235 - IAI46_00110 0.52 +0.2 24,235 - IAI46_00110 0.52 +0.2 24,286 + IAI46_00110 0.60 -0.2 24,311 + IAI46_00110 0.64 -0.7 24,311 + IAI46_00110 0.64 -0.4 24,311 + IAI46_00110 0.64 +0.4 24,312 - IAI46_00110 0.64 +0.5 24,312 - IAI46_00110 0.64 +0.1 24,312 - IAI46_00110 0.64 -0.7 24,314 + IAI46_00110 0.64 -0.7 24,314 + IAI46_00110 0.64 -0.5 24,315 - IAI46_00110 0.65 -0.5 24,647 + -0.8 24,647 + -1.2 24,647 + +0.1 24,647 + +0.4 24,647 + +0.2 24,647 + -0.2 24,648 - -0.6 24,658 + -0.7 24,658 + +2.4 24,659 - +0.4 24,694 + -0.1 24,695 - -1.5 24,695 - +0.3 24,696 + +1.1 24,744 + -2.0 24,819 - +0.4 24,844 + +0.6 24,844 + +0.0 24,845 - +0.4 24,845 - +0.9 24,849 + +0.0 24,849 + -1.4 24,849 + +0.2 24,850 - +0.1 24,850 - +1.5 24,851 + +0.4 24,851 + +0.8 24,852 - +0.4 24,938 + IAI46_00115 0.28 -0.2 24,938 + IAI46_00115 0.28 +0.5 24,938 + IAI46_00115 0.28 -0.1 24,938 + IAI46_00115 0.28 -0.4 24,938 + IAI46_00115 0.28 -0.3 24,939 - IAI46_00115 0.28 -0.1 24,939 - IAI46_00115 0.28 +0.4 24,939 - IAI46_00115 0.28 -0.6 24,939 - IAI46_00115 0.28 -0.4 24,939 - IAI46_00115 0.28 +0.1 24,952 + IAI46_00115 0.31 +0.7 24,953 - IAI46_00115 0.31 -1.6 24,962 + IAI46_00115 0.33 +0.1 24,973 + IAI46_00115 0.36 -0.7 24,973 + IAI46_00115 0.36 -0.2 24,973 + IAI46_00115 0.36 -0.3 25,042 - IAI46_00115 0.52 +0.1 25,094 + IAI46_00115 0.64 +0.6 25,094 + IAI46_00115 0.64 -0.3 25,095 - IAI46_00115 0.64 +0.2 25,121 + IAI46_00115 0.70 +0.4 25,121 + IAI46_00115 0.70 -0.2 25,122 - IAI46_00115 0.70 -0.4 25,122 - IAI46_00115 0.70 -0.3 25,157 + IAI46_00115 0.78 -0.3 25,158 - IAI46_00115 0.78 +0.2 25,213 + +0.4 25,224 + +0.2 25,224 + -0.2 25,224 + -1.6 25,224 + -0.2 25,225 - +0.1 25,313 + IAI46_00120 0.11 -1.3 25,314 - IAI46_00120 0.12 +0.2 25,321 + IAI46_00120 0.13 -0.3 25,642 + IAI46_00120 0.69 +0.1 25,642 + IAI46_00120 0.69 -1.3 25,704 + IAI46_00120 0.80 +0.7 25,705 - IAI46_00120 0.81 +0.1 25,705 - IAI46_00120 0.81 -0.2 25,763 - +0.4 25,771 + +0.0 25,771 + -1.1 25,772 - -0.1 25,772 - -0.7 25,772 - +0.4 25,772 - +1.4 25,773 + -1.6 25,774 - -0.5 25,774 - +0.4 25,774 - -0.1 25,774 - -0.3 25,815 - +0.3 25,815 - +0.1 25,838 + -0.0 25,847 + +0.2 25,847 + +0.2 25,892 + +0.1 25,931 - +0.4 25,931 - +0.3 25,934 + +0.1 25,934 + -0.3 25,935 - -0.3 25,935 - +1.1 25,937 + +0.1 25,937 + -0.2 25,937 + +0.9 25,967 + +0.3 26,007 + -0.5 26,007 + -0.0 26,008 - +0.3 26,020 + +0.3 26,021 - +0.8 26,025 + -1.1 26,025 + +1.1 26,064 + +1.7 26,064 + +0.8 26,064 + -1.0 26,065 - +0.5 26,065 - -0.1 26,067 + +0.7 26,067 + +0.2 26,067 + -0.9 26,074 + -0.3 26,074 + +0.6 26,075 - +0.3 26,096 + -0.7 26,108 + -0.7 26,108 + +0.4 26,109 - -1.0 26,109 - +0.2 26,135 - +0.1 26,170 + +0.0 26,170 + -0.2 26,171 - +0.6 26,171 - +0.7 26,171 - -0.0 26,183 + -0.2 26,194 - -0.5 26,245 + IAI46_00125 0.12 +0.6 26,245 + IAI46_00125 0.12 +0.2 26,246 - IAI46_00125 0.12 +0.4 26,249 + IAI46_00125 0.12 -0.6 26,250 - IAI46_00125 0.12 -0.2 26,250 - IAI46_00125 0.12 +0.3
Or see this region's nucleotide sequence