Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3933 and EX28DRAFT_3934 overlap by 1 nucleotides EX28DRAFT_3934 and EX28DRAFT_3935 overlap by 1 nucleotides
EX28DRAFT_3933: EX28DRAFT_3933 - RND family efflux transporter, MFP subunit, at 140,954 to 142,075
_3933
EX28DRAFT_3934: EX28DRAFT_3934 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 142,075 to 145,185
_3934
EX28DRAFT_3935: EX28DRAFT_3935 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 145,185 to 146,549
_3935
Position (kb) 142
143
144
145
146 Strain fitness (log2 ratio) -1
0
1
2 at 141.566 kb on + strand, within EX28DRAFT_3933 at 141.567 kb on - strand, within EX28DRAFT_3933 at 141.678 kb on - strand, within EX28DRAFT_3933 at 141.678 kb on - strand, within EX28DRAFT_3933 at 141.944 kb on + strand, within EX28DRAFT_3933 at 141.944 kb on + strand, within EX28DRAFT_3933 at 141.945 kb on - strand, within EX28DRAFT_3933 at 142.222 kb on + strand at 142.223 kb on - strand at 142.223 kb on - strand at 142.306 kb on + strand at 142.307 kb on - strand at 142.504 kb on + strand, within EX28DRAFT_3934 at 142.504 kb on + strand, within EX28DRAFT_3934 at 142.504 kb on + strand, within EX28DRAFT_3934 at 142.664 kb on - strand, within EX28DRAFT_3934 at 142.729 kb on - strand, within EX28DRAFT_3934 at 143.143 kb on + strand, within EX28DRAFT_3934 at 143.143 kb on + strand, within EX28DRAFT_3934 at 143.144 kb on - strand, within EX28DRAFT_3934 at 143.331 kb on + strand, within EX28DRAFT_3934 at 143.332 kb on - strand, within EX28DRAFT_3934 at 143.332 kb on - strand, within EX28DRAFT_3934 at 143.334 kb on + strand, within EX28DRAFT_3934 at 143.433 kb on - strand, within EX28DRAFT_3934 at 143.620 kb on + strand, within EX28DRAFT_3934 at 143.696 kb on - strand, within EX28DRAFT_3934 at 143.733 kb on + strand, within EX28DRAFT_3934 at 143.733 kb on + strand, within EX28DRAFT_3934 at 143.734 kb on - strand, within EX28DRAFT_3934 at 143.973 kb on + strand, within EX28DRAFT_3934 at 144.331 kb on + strand, within EX28DRAFT_3934 at 144.332 kb on - strand, within EX28DRAFT_3934 at 144.373 kb on + strand, within EX28DRAFT_3934 at 144.373 kb on + strand, within EX28DRAFT_3934 at 144.374 kb on - strand, within EX28DRAFT_3934 at 144.374 kb on - strand, within EX28DRAFT_3934 at 144.374 kb on - strand, within EX28DRAFT_3934 at 144.607 kb on - strand, within EX28DRAFT_3934 at 144.689 kb on - strand, within EX28DRAFT_3934 at 144.733 kb on + strand, within EX28DRAFT_3934 at 144.734 kb on - strand, within EX28DRAFT_3934 at 144.734 kb on - strand, within EX28DRAFT_3934 at 144.835 kb on + strand, within EX28DRAFT_3934 at 145.137 kb on - strand at 145.183 kb on + strand at 145.184 kb on - strand at 145.195 kb on + strand at 145.196 kb on - strand at 145.199 kb on + strand at 145.200 kb on - strand at 145.200 kb on - strand at 145.251 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 141,566 + EX28DRAFT_3933 0.55 -0.1 141,567 - EX28DRAFT_3933 0.55 +0.1 141,678 - EX28DRAFT_3933 0.65 +1.0 141,678 - EX28DRAFT_3933 0.65 -0.2 141,944 + EX28DRAFT_3933 0.88 -0.5 141,944 + EX28DRAFT_3933 0.88 -0.1 141,945 - EX28DRAFT_3933 0.88 +0.8 142,222 + -0.5 142,223 - -0.1 142,223 - +0.4 142,306 + +0.3 142,307 - +0.3 142,504 + EX28DRAFT_3934 0.14 -0.2 142,504 + EX28DRAFT_3934 0.14 +1.6 142,504 + EX28DRAFT_3934 0.14 +0.3 142,664 - EX28DRAFT_3934 0.19 +0.3 142,729 - EX28DRAFT_3934 0.21 +0.1 143,143 + EX28DRAFT_3934 0.34 +0.1 143,143 + EX28DRAFT_3934 0.34 +1.8 143,144 - EX28DRAFT_3934 0.34 +0.7 143,331 + EX28DRAFT_3934 0.40 +2.5 143,332 - EX28DRAFT_3934 0.40 +0.3 143,332 - EX28DRAFT_3934 0.40 +0.1 143,334 + EX28DRAFT_3934 0.40 +0.0 143,433 - EX28DRAFT_3934 0.44 +0.1 143,620 + EX28DRAFT_3934 0.50 +0.6 143,696 - EX28DRAFT_3934 0.52 -0.1 143,733 + EX28DRAFT_3934 0.53 +0.8 143,733 + EX28DRAFT_3934 0.53 -0.2 143,734 - EX28DRAFT_3934 0.53 +0.9 143,973 + EX28DRAFT_3934 0.61 +0.9 144,331 + EX28DRAFT_3934 0.73 -0.2 144,332 - EX28DRAFT_3934 0.73 -0.4 144,373 + EX28DRAFT_3934 0.74 +0.3 144,373 + EX28DRAFT_3934 0.74 +0.7 144,374 - EX28DRAFT_3934 0.74 -0.9 144,374 - EX28DRAFT_3934 0.74 -0.4 144,374 - EX28DRAFT_3934 0.74 +0.5 144,607 - EX28DRAFT_3934 0.81 +0.1 144,689 - EX28DRAFT_3934 0.84 -0.1 144,733 + EX28DRAFT_3934 0.85 +0.1 144,734 - EX28DRAFT_3934 0.85 -1.1 144,734 - EX28DRAFT_3934 0.85 +0.1 144,835 + EX28DRAFT_3934 0.89 -1.6 145,137 - -1.1 145,183 + -1.3 145,184 - -0.1 145,195 + -0.4 145,196 - +0.4 145,199 + -0.0 145,200 - +0.8 145,200 - +0.3 145,251 + +0.7
Or see this region's nucleotide sequence