Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3476

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3475 and EX28DRAFT_3476 are separated by 19 nucleotidesEX28DRAFT_3476 and EX28DRAFT_3477 are separated by 53 nucleotidesEX28DRAFT_3477 and EX28DRAFT_3478 are separated by 12 nucleotides EX28DRAFT_3475: EX28DRAFT_3475 - hypothetical protein, at 143,469 to 143,654 _3475 EX28DRAFT_3476: EX28DRAFT_3476 - hypothetical protein, at 143,674 to 143,841 _3476 EX28DRAFT_3477: EX28DRAFT_3477 - Helix-turn-helix domain, at 143,895 to 144,509 _3477 EX28DRAFT_3478: EX28DRAFT_3478 - hypothetical protein, at 144,522 to 144,803 _3478 Position (kb) 143 144Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 142.714 kb on + strandat 142.714 kb on + strandat 142.715 kb on - strandat 142.777 kb on - strandat 142.786 kb on - strandat 142.786 kb on - strandat 142.832 kb on + strandat 142.832 kb on + strandat 142.832 kb on + strandat 142.833 kb on - strandat 142.870 kb on - strandat 142.873 kb on + strandat 142.873 kb on + strandat 142.873 kb on + strandat 142.873 kb on + strandat 142.874 kb on - strandat 142.874 kb on - strandat 142.874 kb on - strandat 142.914 kb on + strandat 142.915 kb on - strandat 142.924 kb on + strandat 142.924 kb on + strandat 142.924 kb on + strandat 142.925 kb on - strandat 142.925 kb on - strandat 142.925 kb on - strandat 142.932 kb on - strandat 142.934 kb on + strandat 142.934 kb on + strandat 142.943 kb on + strandat 142.944 kb on - strandat 142.944 kb on - strandat 142.990 kb on - strandat 142.990 kb on - strandat 142.995 kb on + strandat 142.996 kb on - strandat 143.006 kb on + strandat 143.014 kb on + strandat 143.054 kb on - strandat 143.057 kb on + strandat 143.058 kb on - strandat 143.060 kb on + strandat 143.073 kb on - strandat 143.073 kb on - strandat 143.089 kb on - strandat 143.089 kb on - strandat 143.172 kb on + strandat 143.209 kb on - strandat 143.233 kb on + strandat 143.234 kb on - strandat 143.234 kb on - strandat 143.234 kb on - strandat 143.349 kb on - strandat 143.351 kb on - strandat 143.355 kb on + strandat 143.356 kb on - strandat 143.356 kb on - strandat 143.356 kb on - strandat 143.359 kb on - strandat 143.366 kb on - strandat 143.368 kb on - strandat 143.445 kb on - strandat 143.545 kb on + strand, within EX28DRAFT_3475at 143.545 kb on + strand, within EX28DRAFT_3475at 143.789 kb on - strand, within EX28DRAFT_3476at 143.856 kb on + strandat 143.860 kb on - strandat 143.881 kb on + strandat 144.013 kb on - strand, within EX28DRAFT_3477at 144.033 kb on - strand, within EX28DRAFT_3477at 144.116 kb on + strand, within EX28DRAFT_3477at 144.142 kb on + strand, within EX28DRAFT_3477at 144.167 kb on + strand, within EX28DRAFT_3477at 144.173 kb on + strand, within EX28DRAFT_3477at 144.174 kb on - strand, within EX28DRAFT_3477at 144.174 kb on - strand, within EX28DRAFT_3477at 144.192 kb on + strand, within EX28DRAFT_3477at 144.193 kb on - strand, within EX28DRAFT_3477at 144.193 kb on - strand, within EX28DRAFT_3477at 144.220 kb on + strand, within EX28DRAFT_3477at 144.257 kb on - strand, within EX28DRAFT_3477at 144.321 kb on - strand, within EX28DRAFT_3477at 144.340 kb on - strand, within EX28DRAFT_3477at 144.421 kb on + strand, within EX28DRAFT_3477at 144.421 kb on + strand, within EX28DRAFT_3477at 144.475 kb on - strandat 144.539 kb on - strandat 144.572 kb on + strand, within EX28DRAFT_3478at 144.614 kb on - strand, within EX28DRAFT_3478at 144.668 kb on - strand, within EX28DRAFT_3478at 144.704 kb on - strand, within EX28DRAFT_3478at 144.751 kb on - strand, within EX28DRAFT_3478at 144.840 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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142,714 + +0.2
142,714 + +0.5
142,715 - +0.7
142,777 - -0.2
142,786 - -0.1
142,786 - +0.6
142,832 + +0.0
142,832 + +3.9
142,832 + -0.5
142,833 - -0.3
142,870 - +0.3
142,873 + +0.6
142,873 + -0.1
142,873 + -0.3
142,873 + -0.1
142,874 - +0.5
142,874 - +0.4
142,874 - +0.1
142,914 + -0.7
142,915 - +1.0
142,924 + +0.6
142,924 + -0.3
142,924 + +0.1
142,925 - +0.1
142,925 - +1.2
142,925 - +2.3
142,932 - +0.2
142,934 + +0.1
142,934 + -0.3
142,943 + -0.1
142,944 - -0.5
142,944 - -0.3
142,990 - -0.0
142,990 - +0.7
142,995 + +0.3
142,996 - +0.7
143,006 + +0.5
143,014 + +0.2
143,054 - +2.7
143,057 + -0.4
143,058 - +0.6
143,060 + -0.2
143,073 - +0.6
143,073 - +0.2
143,089 - -0.1
143,089 - -0.3
143,172 + +0.7
143,209 - -0.3
143,233 + +0.5
143,234 - +0.5
143,234 - +1.1
143,234 - +0.0
143,349 - +0.1
143,351 - +0.2
143,355 + -0.1
143,356 - +0.3
143,356 - -0.3
143,356 - -0.8
143,359 - +0.4
143,366 - +0.1
143,368 - -0.1
143,445 - +0.2
143,545 + EX28DRAFT_3475 0.41 -1.1
143,545 + EX28DRAFT_3475 0.41 +0.2
143,789 - EX28DRAFT_3476 0.68 +0.7
143,856 + -0.0
143,860 - -0.1
143,881 + -0.5
144,013 - EX28DRAFT_3477 0.19 -0.5
144,033 - EX28DRAFT_3477 0.22 +0.4
144,116 + EX28DRAFT_3477 0.36 -0.8
144,142 + EX28DRAFT_3477 0.40 +0.7
144,167 + EX28DRAFT_3477 0.44 -0.4
144,173 + EX28DRAFT_3477 0.45 -0.4
144,174 - EX28DRAFT_3477 0.45 +0.2
144,174 - EX28DRAFT_3477 0.45 +1.6
144,192 + EX28DRAFT_3477 0.48 -0.1
144,193 - EX28DRAFT_3477 0.48 -0.8
144,193 - EX28DRAFT_3477 0.48 -0.4
144,220 + EX28DRAFT_3477 0.53 -0.2
144,257 - EX28DRAFT_3477 0.59 +0.1
144,321 - EX28DRAFT_3477 0.69 -0.3
144,340 - EX28DRAFT_3477 0.72 -0.3
144,421 + EX28DRAFT_3477 0.86 -0.4
144,421 + EX28DRAFT_3477 0.86 -0.3
144,475 - +1.0
144,539 - -0.3
144,572 + EX28DRAFT_3478 0.18 -0.1
144,614 - EX28DRAFT_3478 0.33 -0.2
144,668 - EX28DRAFT_3478 0.52 -0.3
144,704 - EX28DRAFT_3478 0.65 -1.9
144,751 - EX28DRAFT_3478 0.81 -1.1
144,840 + +0.0

Or see this region's nucleotide sequence