Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3388 and EX28DRAFT_3389 are separated by 67 nucleotides EX28DRAFT_3389 and EX28DRAFT_3390 are separated by 233 nucleotides EX28DRAFT_3390 and EX28DRAFT_3391 are separated by 311 nucleotides
EX28DRAFT_3388: EX28DRAFT_3388 - ribosomal protein L9, at 55,818 to 56,267
_3388
EX28DRAFT_3389: EX28DRAFT_3389 - Cell envelope opacity-associated protein A, at 56,335 to 56,979
_3389
EX28DRAFT_3390: EX28DRAFT_3390 - FKBP-type peptidyl-prolyl cis-trans isomerases 1, at 57,213 to 57,833
_3390
EX28DRAFT_3391: EX28DRAFT_3391 - Gamma-aminobutyrate permease and related permeases, at 58,145 to 59,554
_3391
Position (kb) 57
58 Strain fitness (log2 ratio) -1
0
1 at 56.321 kb on + strand at 56.513 kb on + strand, within EX28DRAFT_3389 at 56.952 kb on + strand at 56.953 kb on - strand at 57.027 kb on - strand at 57.035 kb on - strand at 57.096 kb on + strand at 57.103 kb on - strand at 57.103 kb on - strand at 57.174 kb on - strand at 57.174 kb on - strand at 57.190 kb on + strand at 57.191 kb on - strand at 57.191 kb on - strand at 57.313 kb on + strand, within EX28DRAFT_3390 at 57.472 kb on - strand, within EX28DRAFT_3390 at 57.591 kb on + strand, within EX28DRAFT_3390 at 57.592 kb on - strand, within EX28DRAFT_3390 at 57.744 kb on - strand, within EX28DRAFT_3390 at 57.831 kb on + strand at 57.883 kb on - strand at 57.891 kb on + strand at 58.012 kb on + strand at 58.020 kb on - strand at 58.045 kb on + strand at 58.111 kb on + strand at 58.111 kb on + strand at 58.150 kb on - strand at 58.150 kb on - strand at 58.225 kb on + strand at 58.322 kb on + strand, within EX28DRAFT_3391 at 58.324 kb on + strand, within EX28DRAFT_3391 at 58.340 kb on - strand, within EX28DRAFT_3391 at 58.735 kb on + strand, within EX28DRAFT_3391 at 58.809 kb on + strand, within EX28DRAFT_3391 at 58.809 kb on + strand, within EX28DRAFT_3391
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 56,321 + +0.1 56,513 + EX28DRAFT_3389 0.28 +0.2 56,952 + -0.2 56,953 - +0.4 57,027 - -0.2 57,035 - +0.7 57,096 + +1.7 57,103 - -0.0 57,103 - +0.1 57,174 - -0.0 57,174 - -0.3 57,190 + -0.1 57,191 - +0.7 57,191 - +0.3 57,313 + EX28DRAFT_3390 0.16 -1.2 57,472 - EX28DRAFT_3390 0.42 -1.4 57,591 + EX28DRAFT_3390 0.61 -0.9 57,592 - EX28DRAFT_3390 0.61 +0.5 57,744 - EX28DRAFT_3390 0.86 -0.8 57,831 + +1.7 57,883 - -0.3 57,891 + +0.3 58,012 + +0.6 58,020 - +0.0 58,045 + -0.2 58,111 + -0.9 58,111 + +0.3 58,150 - -0.5 58,150 - -0.4 58,225 + -0.1 58,322 + EX28DRAFT_3391 0.13 +0.7 58,324 + EX28DRAFT_3391 0.13 +0.2 58,340 - EX28DRAFT_3391 0.14 -0.7 58,735 + EX28DRAFT_3391 0.42 -1.6 58,809 + EX28DRAFT_3391 0.47 +0.2 58,809 + EX28DRAFT_3391 0.47 -1.4
Or see this region's nucleotide sequence