Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3212

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3211 and EX28DRAFT_3212 are separated by 180 nucleotidesEX28DRAFT_3212 and EX28DRAFT_3213 are separated by 108 nucleotides EX28DRAFT_3211: EX28DRAFT_3211 - Superfamily II DNA and RNA helicases, at 509,871 to 511,766 _3211 EX28DRAFT_3212: EX28DRAFT_3212 - Lipoprotein NlpI, contains TPR repeats, at 511,947 to 512,831 _3212 EX28DRAFT_3213: EX28DRAFT_3213 - polyribonucleotide nucleotidyltransferase, at 512,940 to 515,078 _3213 Position (kb) 511 512 513Strain fitness (log2 ratio) -1 0 1at 511.178 kb on + strand, within EX28DRAFT_3211at 511.804 kb on - strandat 511.937 kb on - strandat 511.999 kb on - strandat 512.015 kb on - strandat 512.321 kb on - strand, within EX28DRAFT_3212at 512.321 kb on - strand, within EX28DRAFT_3212at 512.447 kb on - strand, within EX28DRAFT_3212at 512.527 kb on - strand, within EX28DRAFT_3212at 512.613 kb on - strand, within EX28DRAFT_3212at 512.617 kb on + strand, within EX28DRAFT_3212at 512.637 kb on + strand, within EX28DRAFT_3212at 512.683 kb on - strand, within EX28DRAFT_3212at 512.756 kb on + strandat 512.852 kb on + strandat 512.852 kb on + strandat 512.853 kb on - strandat 512.906 kb on + strandat 512.907 kb on - strandat 512.941 kb on + strandat 512.942 kb on - strandat 512.942 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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511,178 + EX28DRAFT_3211 0.69 -0.2
511,804 - -1.3
511,937 - +0.0
511,999 - +0.3
512,015 - -0.2
512,321 - EX28DRAFT_3212 0.42 -0.1
512,321 - EX28DRAFT_3212 0.42 -0.8
512,447 - EX28DRAFT_3212 0.56 -0.8
512,527 - EX28DRAFT_3212 0.66 -0.1
512,613 - EX28DRAFT_3212 0.75 +0.0
512,617 + EX28DRAFT_3212 0.76 -0.2
512,637 + EX28DRAFT_3212 0.78 -1.1
512,683 - EX28DRAFT_3212 0.83 -0.7
512,756 + -0.2
512,852 + +0.4
512,852 + +0.3
512,853 - +0.1
512,906 + +0.1
512,907 - +0.2
512,941 + -0.3
512,942 - -0.2
512,942 - +0.3

Or see this region's nucleotide sequence