Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3108 and EX28DRAFT_3109 are separated by 144 nucleotides EX28DRAFT_3109 and EX28DRAFT_3110 are separated by 56 nucleotides EX28DRAFT_3110 and EX28DRAFT_3111 are separated by 11 nucleotides
EX28DRAFT_3108: EX28DRAFT_3108 - phage tail tape measure protein, TP901 family, core region, at 416,655 to 418,934
_3108
EX28DRAFT_3109: EX28DRAFT_3109 - Mu-like prophage FluMu protein gp41, at 419,079 to 419,387
_3109
EX28DRAFT_3110: EX28DRAFT_3110 - phage contractile tail tube protein, P2 family, at 419,444 to 419,962
_3110
EX28DRAFT_3111: EX28DRAFT_3111 - Phage tail sheath protein FI, at 419,974 to 421,161
_3111
Position (kb) 419
420 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 418.593 kb on + strand, within EX28DRAFT_3108 at 418.594 kb on - strand, within EX28DRAFT_3108 at 418.604 kb on - strand, within EX28DRAFT_3108 at 418.613 kb on + strand, within EX28DRAFT_3108 at 418.686 kb on - strand, within EX28DRAFT_3108 at 418.925 kb on + strand at 418.925 kb on + strand at 418.925 kb on + strand at 418.926 kb on - strand at 418.926 kb on - strand at 418.928 kb on + strand at 418.973 kb on - strand at 419.000 kb on + strand at 419.117 kb on + strand, within EX28DRAFT_3109 at 419.339 kb on + strand, within EX28DRAFT_3109 at 419.339 kb on + strand, within EX28DRAFT_3109 at 419.339 kb on + strand, within EX28DRAFT_3109 at 419.379 kb on - strand at 419.379 kb on - strand at 419.851 kb on - strand, within EX28DRAFT_3110 at 419.851 kb on - strand, within EX28DRAFT_3110 at 419.907 kb on + strand, within EX28DRAFT_3110 at 419.907 kb on + strand, within EX28DRAFT_3110 at 419.908 kb on - strand, within EX28DRAFT_3110 at 419.908 kb on - strand, within EX28DRAFT_3110 at 419.908 kb on - strand, within EX28DRAFT_3110 at 419.942 kb on - strand at 419.976 kb on - strand at 420.009 kb on - strand at 420.072 kb on - strand at 420.129 kb on - strand, within EX28DRAFT_3111 at 420.150 kb on + strand, within EX28DRAFT_3111 at 420.152 kb on + strand, within EX28DRAFT_3111 at 420.153 kb on - strand, within EX28DRAFT_3111 at 420.153 kb on - strand, within EX28DRAFT_3111 at 420.231 kb on + strand, within EX28DRAFT_3111 at 420.285 kb on + strand, within EX28DRAFT_3111 at 420.331 kb on - strand, within EX28DRAFT_3111 at 420.331 kb on - strand, within EX28DRAFT_3111 at 420.487 kb on - strand, within EX28DRAFT_3111 at 420.661 kb on - strand, within EX28DRAFT_3111 at 420.680 kb on + strand, within EX28DRAFT_3111 at 420.681 kb on - strand, within EX28DRAFT_3111 at 420.822 kb on + strand, within EX28DRAFT_3111
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 418,593 + EX28DRAFT_3108 0.85 -0.8 418,594 - EX28DRAFT_3108 0.85 +0.6 418,604 - EX28DRAFT_3108 0.85 +0.5 418,613 + EX28DRAFT_3108 0.86 -0.0 418,686 - EX28DRAFT_3108 0.89 -0.5 418,925 + +0.4 418,925 + -0.7 418,925 + -0.2 418,926 - -0.7 418,926 - -1.3 418,928 + +0.2 418,973 - +0.4 419,000 + -0.0 419,117 + EX28DRAFT_3109 0.12 +0.2 419,339 + EX28DRAFT_3109 0.84 -1.2 419,339 + EX28DRAFT_3109 0.84 +0.8 419,339 + EX28DRAFT_3109 0.84 -1.0 419,379 - -0.7 419,379 - +0.5 419,851 - EX28DRAFT_3110 0.78 -1.1 419,851 - EX28DRAFT_3110 0.78 +0.5 419,907 + EX28DRAFT_3110 0.89 +0.3 419,907 + EX28DRAFT_3110 0.89 -2.9 419,908 - EX28DRAFT_3110 0.89 -0.1 419,908 - EX28DRAFT_3110 0.89 -2.2 419,908 - EX28DRAFT_3110 0.89 -1.2 419,942 - -0.2 419,976 - +0.1 420,009 - -0.3 420,072 - +0.1 420,129 - EX28DRAFT_3111 0.13 -0.7 420,150 + EX28DRAFT_3111 0.15 +0.4 420,152 + EX28DRAFT_3111 0.15 +0.2 420,153 - EX28DRAFT_3111 0.15 -0.0 420,153 - EX28DRAFT_3111 0.15 -0.2 420,231 + EX28DRAFT_3111 0.22 +0.8 420,285 + EX28DRAFT_3111 0.26 +3.1 420,331 - EX28DRAFT_3111 0.30 +0.1 420,331 - EX28DRAFT_3111 0.30 -0.8 420,487 - EX28DRAFT_3111 0.43 +0.2 420,661 - EX28DRAFT_3111 0.58 -0.2 420,680 + EX28DRAFT_3111 0.59 -0.1 420,681 - EX28DRAFT_3111 0.60 +0.2 420,822 + EX28DRAFT_3111 0.71 -0.1
Or see this region's nucleotide sequence