Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3028

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3027 and EX28DRAFT_3028 are separated by 245 nucleotidesEX28DRAFT_3028 and EX28DRAFT_3029 are separated by 160 nucleotidesEX28DRAFT_3029 and EX28DRAFT_3030 are separated by 73 nucleotides EX28DRAFT_3027: EX28DRAFT_3027 - ABC-type dipeptide transport system, periplasmic component, at 338,193 to 339,782 _3027 EX28DRAFT_3028: EX28DRAFT_3028 - Glutathione S-transferase, at 340,028 to 340,894 _3028 EX28DRAFT_3029: EX28DRAFT_3029 - hypothetical protein, at 341,055 to 341,387 _3029 EX28DRAFT_3030: EX28DRAFT_3030 - Esterase/lipase, at 341,461 to 342,363 _3030 Position (kb) 340 341Strain fitness (log2 ratio) -2 -1 0 1 2at 339.127 kb on + strand, within EX28DRAFT_3027at 339.299 kb on + strand, within EX28DRAFT_3027at 339.299 kb on + strand, within EX28DRAFT_3027at 339.300 kb on - strand, within EX28DRAFT_3027at 339.463 kb on - strand, within EX28DRAFT_3027at 339.474 kb on - strand, within EX28DRAFT_3027at 339.475 kb on + strand, within EX28DRAFT_3027at 339.539 kb on + strand, within EX28DRAFT_3027at 339.540 kb on - strand, within EX28DRAFT_3027at 339.548 kb on - strand, within EX28DRAFT_3027at 339.559 kb on + strand, within EX28DRAFT_3027at 339.602 kb on - strand, within EX28DRAFT_3027at 339.602 kb on - strand, within EX28DRAFT_3027at 339.635 kb on + strandat 339.649 kb on - strandat 339.649 kb on - strandat 339.803 kb on + strandat 339.831 kb on + strandat 339.832 kb on - strandat 339.832 kb on - strandat 339.846 kb on + strandat 339.871 kb on + strandat 339.917 kb on - strandat 339.917 kb on - strandat 339.918 kb on + strandat 339.919 kb on - strandat 339.919 kb on - strandat 339.919 kb on - strandat 339.920 kb on + strandat 339.920 kb on + strandat 339.921 kb on - strandat 339.991 kb on - strandat 340.111 kb on + strandat 340.170 kb on - strand, within EX28DRAFT_3028at 340.388 kb on - strand, within EX28DRAFT_3028at 340.520 kb on + strand, within EX28DRAFT_3028at 340.520 kb on + strand, within EX28DRAFT_3028at 340.521 kb on - strand, within EX28DRAFT_3028at 340.521 kb on - strand, within EX28DRAFT_3028at 340.526 kb on + strand, within EX28DRAFT_3028at 340.526 kb on + strand, within EX28DRAFT_3028at 340.527 kb on - strand, within EX28DRAFT_3028at 340.527 kb on - strand, within EX28DRAFT_3028at 340.527 kb on - strand, within EX28DRAFT_3028at 340.640 kb on + strand, within EX28DRAFT_3028at 340.640 kb on + strand, within EX28DRAFT_3028at 340.640 kb on + strand, within EX28DRAFT_3028at 340.640 kb on + strand, within EX28DRAFT_3028at 340.641 kb on - strand, within EX28DRAFT_3028at 340.641 kb on - strand, within EX28DRAFT_3028at 340.734 kb on - strand, within EX28DRAFT_3028at 340.739 kb on - strand, within EX28DRAFT_3028at 340.870 kb on + strandat 340.879 kb on + strandat 340.879 kb on + strandat 340.879 kb on + strandat 340.879 kb on + strandat 340.880 kb on - strandat 340.880 kb on - strandat 340.892 kb on + strandat 340.950 kb on + strandat 340.951 kb on - strandat 340.970 kb on + strandat 340.983 kb on - strandat 341.055 kb on - strandat 341.066 kb on + strandat 341.066 kb on + strandat 341.253 kb on - strand, within EX28DRAFT_3029at 341.514 kb on + strandat 341.514 kb on + strandat 341.514 kb on + strandat 341.514 kb on + strandat 341.515 kb on - strandat 341.557 kb on + strand, within EX28DRAFT_3030at 341.592 kb on - strand, within EX28DRAFT_3030at 341.621 kb on + strand, within EX28DRAFT_3030at 341.622 kb on - strand, within EX28DRAFT_3030at 341.671 kb on - strand, within EX28DRAFT_3030at 341.687 kb on + strand, within EX28DRAFT_3030at 341.750 kb on + strand, within EX28DRAFT_3030at 341.750 kb on + strand, within EX28DRAFT_3030at 341.750 kb on + strand, within EX28DRAFT_3030at 341.751 kb on - strand, within EX28DRAFT_3030at 341.751 kb on - strand, within EX28DRAFT_3030at 341.751 kb on - strand, within EX28DRAFT_3030at 341.751 kb on - strand, within EX28DRAFT_3030at 341.751 kb on - strand, within EX28DRAFT_3030at 341.800 kb on + strand, within EX28DRAFT_3030

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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339,127 + EX28DRAFT_3027 0.59 -1.0
339,299 + EX28DRAFT_3027 0.70 +0.5
339,299 + EX28DRAFT_3027 0.70 +0.3
339,300 - EX28DRAFT_3027 0.70 +0.1
339,463 - EX28DRAFT_3027 0.80 -0.5
339,474 - EX28DRAFT_3027 0.81 -0.6
339,475 + EX28DRAFT_3027 0.81 -0.2
339,539 + EX28DRAFT_3027 0.85 -0.7
339,540 - EX28DRAFT_3027 0.85 +2.2
339,548 - EX28DRAFT_3027 0.85 -0.3
339,559 + EX28DRAFT_3027 0.86 +0.4
339,602 - EX28DRAFT_3027 0.89 +0.4
339,602 - EX28DRAFT_3027 0.89 -0.5
339,635 + -0.7
339,649 - -0.2
339,649 - -1.1
339,803 + -0.1
339,831 + +0.2
339,832 - +0.2
339,832 - -0.4
339,846 + -0.7
339,871 + +0.1
339,917 - +0.6
339,917 - -0.3
339,918 + -0.2
339,919 - -0.4
339,919 - -0.0
339,919 - +0.6
339,920 + -0.1
339,920 + -0.3
339,921 - -0.3
339,991 - +0.0
340,111 + +0.9
340,170 - EX28DRAFT_3028 0.16 +0.5
340,388 - EX28DRAFT_3028 0.42 -0.2
340,520 + EX28DRAFT_3028 0.57 +0.5
340,520 + EX28DRAFT_3028 0.57 +0.9
340,521 - EX28DRAFT_3028 0.57 -1.1
340,521 - EX28DRAFT_3028 0.57 +0.4
340,526 + EX28DRAFT_3028 0.57 -0.1
340,526 + EX28DRAFT_3028 0.57 +0.7
340,527 - EX28DRAFT_3028 0.58 +0.2
340,527 - EX28DRAFT_3028 0.58 +0.1
340,527 - EX28DRAFT_3028 0.58 +1.2
340,640 + EX28DRAFT_3028 0.71 +2.2
340,640 + EX28DRAFT_3028 0.71 +0.3
340,640 + EX28DRAFT_3028 0.71 +0.0
340,640 + EX28DRAFT_3028 0.71 -0.3
340,641 - EX28DRAFT_3028 0.71 +0.4
340,641 - EX28DRAFT_3028 0.71 +0.5
340,734 - EX28DRAFT_3028 0.81 +1.0
340,739 - EX28DRAFT_3028 0.82 +0.2
340,870 + -0.7
340,879 + -1.5
340,879 + -0.1
340,879 + +0.7
340,879 + -0.4
340,880 - -1.5
340,880 - +0.0
340,892 + +0.2
340,950 + -0.4
340,951 - -0.3
340,970 + -0.1
340,983 - -0.1
341,055 - -0.8
341,066 + -0.3
341,066 + +1.7
341,253 - EX28DRAFT_3029 0.59 -0.2
341,514 + +0.4
341,514 + +0.4
341,514 + -0.0
341,514 + +0.2
341,515 - -0.3
341,557 + EX28DRAFT_3030 0.11 +1.2
341,592 - EX28DRAFT_3030 0.15 -1.3
341,621 + EX28DRAFT_3030 0.18 -0.1
341,622 - EX28DRAFT_3030 0.18 +0.1
341,671 - EX28DRAFT_3030 0.23 +0.7
341,687 + EX28DRAFT_3030 0.25 -0.3
341,750 + EX28DRAFT_3030 0.32 -0.1
341,750 + EX28DRAFT_3030 0.32 +0.2
341,750 + EX28DRAFT_3030 0.32 -0.2
341,751 - EX28DRAFT_3030 0.32 -2.1
341,751 - EX28DRAFT_3030 0.32 +0.4
341,751 - EX28DRAFT_3030 0.32 -0.0
341,751 - EX28DRAFT_3030 0.32 -0.3
341,751 - EX28DRAFT_3030 0.32 +0.2
341,800 + EX28DRAFT_3030 0.38 -0.3

Or see this region's nucleotide sequence