Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2800 and EX28DRAFT_2801 overlap by 56 nucleotides EX28DRAFT_2801 and EX28DRAFT_2802 are separated by 293 nucleotides
EX28DRAFT_2800: EX28DRAFT_2800 - Pyridine nucleotide-disulphide oxidoreductase, at 103,104 to 104,237
_2800
EX28DRAFT_2801: EX28DRAFT_2801 - hypothetical protein, at 104,182 to 104,394
_2801
EX28DRAFT_2802: EX28DRAFT_2802 - high-affinity nickel-transporter, HoxN/HupN/NixA family, at 104,688 to 105,710
_2802
Position (kb) 104
105 Strain fitness (log2 ratio) -1
0
1 at 103.240 kb on + strand, within EX28DRAFT_2800 at 103.241 kb on - strand, within EX28DRAFT_2800 at 103.253 kb on + strand, within EX28DRAFT_2800 at 103.495 kb on - strand, within EX28DRAFT_2800 at 103.495 kb on - strand, within EX28DRAFT_2800 at 103.596 kb on - strand, within EX28DRAFT_2800 at 103.628 kb on + strand, within EX28DRAFT_2800 at 103.628 kb on + strand, within EX28DRAFT_2800 at 103.628 kb on + strand, within EX28DRAFT_2800 at 103.629 kb on - strand, within EX28DRAFT_2800 at 103.629 kb on - strand, within EX28DRAFT_2800 at 103.629 kb on - strand, within EX28DRAFT_2800 at 103.629 kb on - strand, within EX28DRAFT_2800 at 103.629 kb on - strand, within EX28DRAFT_2800 at 103.658 kb on - strand, within EX28DRAFT_2800 at 103.874 kb on - strand, within EX28DRAFT_2800 at 103.877 kb on + strand, within EX28DRAFT_2800 at 103.877 kb on + strand, within EX28DRAFT_2800 at 104.063 kb on - strand, within EX28DRAFT_2800 at 104.227 kb on + strand at 104.287 kb on - strand, within EX28DRAFT_2801 at 104.311 kb on - strand, within EX28DRAFT_2801 at 104.314 kb on - strand, within EX28DRAFT_2801 at 104.697 kb on + strand at 104.697 kb on + strand at 104.697 kb on + strand at 104.698 kb on - strand at 104.929 kb on + strand, within EX28DRAFT_2802 at 104.929 kb on + strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.167 kb on + strand, within EX28DRAFT_2802
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 103,240 + EX28DRAFT_2800 0.12 -1.2 103,241 - EX28DRAFT_2800 0.12 +1.6 103,253 + EX28DRAFT_2800 0.13 -0.5 103,495 - EX28DRAFT_2800 0.34 +0.5 103,495 - EX28DRAFT_2800 0.34 +0.3 103,596 - EX28DRAFT_2800 0.43 +0.3 103,628 + EX28DRAFT_2800 0.46 +0.6 103,628 + EX28DRAFT_2800 0.46 +0.5 103,628 + EX28DRAFT_2800 0.46 +0.1 103,629 - EX28DRAFT_2800 0.46 -0.1 103,629 - EX28DRAFT_2800 0.46 +0.1 103,629 - EX28DRAFT_2800 0.46 +0.0 103,629 - EX28DRAFT_2800 0.46 +0.1 103,629 - EX28DRAFT_2800 0.46 +0.4 103,658 - EX28DRAFT_2800 0.49 -1.3 103,874 - EX28DRAFT_2800 0.68 +0.3 103,877 + EX28DRAFT_2800 0.68 -0.4 103,877 + EX28DRAFT_2800 0.68 -1.0 104,063 - EX28DRAFT_2800 0.85 +0.6 104,227 + +1.4 104,287 - EX28DRAFT_2801 0.49 +1.6 104,311 - EX28DRAFT_2801 0.61 +0.3 104,314 - EX28DRAFT_2801 0.62 +0.0 104,697 + -0.1 104,697 + -0.2 104,697 + +0.4 104,698 - -0.5 104,929 + EX28DRAFT_2802 0.24 -0.1 104,929 + EX28DRAFT_2802 0.24 -0.2 105,152 - EX28DRAFT_2802 0.45 -0.4 105,152 - EX28DRAFT_2802 0.45 +0.9 105,152 - EX28DRAFT_2802 0.45 -0.1 105,152 - EX28DRAFT_2802 0.45 +0.1 105,152 - EX28DRAFT_2802 0.45 -0.1 105,152 - EX28DRAFT_2802 0.45 +0.6 105,152 - EX28DRAFT_2802 0.45 -0.4 105,167 + EX28DRAFT_2802 0.47 +0.0
Or see this region's nucleotide sequence