Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2452

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2451 and EX28DRAFT_2452 are separated by 86 nucleotidesEX28DRAFT_2452 and EX28DRAFT_2453 are separated by 74 nucleotidesEX28DRAFT_2453 and EX28DRAFT_2454 are separated by 92 nucleotides EX28DRAFT_2451: EX28DRAFT_2451 - PTS system, glucose-like IIB component, at 2,481,290 to 2,482,789 _2451 EX28DRAFT_2452: EX28DRAFT_2452 - transcriptional regulator, LacI family, at 2,482,876 to 2,483,892 _2452 EX28DRAFT_2453: EX28DRAFT_2453 - Predicted membrane-bound metal-dependent hydrolases, at 2,483,967 to 2,484,488 _2453 EX28DRAFT_2454: EX28DRAFT_2454 - cysteinyl-tRNA synthetase (EC 6.1.1.16), at 2,484,581 to 2,485,966 _2454 Position (kb) 2482 2483 2484Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2481.972 kb on - strand, within EX28DRAFT_2451at 2482.064 kb on + strand, within EX28DRAFT_2451at 2482.064 kb on + strand, within EX28DRAFT_2451at 2482.142 kb on + strand, within EX28DRAFT_2451at 2482.243 kb on + strand, within EX28DRAFT_2451at 2482.304 kb on + strand, within EX28DRAFT_2451at 2482.304 kb on + strand, within EX28DRAFT_2451at 2482.305 kb on - strand, within EX28DRAFT_2451at 2482.305 kb on - strand, within EX28DRAFT_2451at 2482.305 kb on - strand, within EX28DRAFT_2451at 2482.316 kb on + strand, within EX28DRAFT_2451at 2482.316 kb on + strand, within EX28DRAFT_2451at 2482.316 kb on + strand, within EX28DRAFT_2451at 2482.316 kb on + strand, within EX28DRAFT_2451at 2482.317 kb on - strand, within EX28DRAFT_2451at 2482.317 kb on - strand, within EX28DRAFT_2451at 2482.367 kb on + strand, within EX28DRAFT_2451at 2482.458 kb on - strand, within EX28DRAFT_2451at 2482.787 kb on + strandat 2482.790 kb on + strandat 2482.791 kb on - strandat 2482.791 kb on - strandat 2483.014 kb on + strand, within EX28DRAFT_2452at 2483.022 kb on + strand, within EX28DRAFT_2452at 2483.149 kb on + strand, within EX28DRAFT_2452at 2483.151 kb on + strand, within EX28DRAFT_2452at 2483.152 kb on - strand, within EX28DRAFT_2452at 2483.214 kb on + strand, within EX28DRAFT_2452at 2483.243 kb on - strand, within EX28DRAFT_2452at 2483.392 kb on + strand, within EX28DRAFT_2452at 2483.426 kb on - strand, within EX28DRAFT_2452at 2483.521 kb on + strand, within EX28DRAFT_2452at 2483.724 kb on + strand, within EX28DRAFT_2452at 2483.725 kb on - strand, within EX28DRAFT_2452at 2483.725 kb on - strand, within EX28DRAFT_2452at 2483.761 kb on + strand, within EX28DRAFT_2452at 2483.762 kb on - strand, within EX28DRAFT_2452at 2483.762 kb on - strand, within EX28DRAFT_2452at 2483.762 kb on - strand, within EX28DRAFT_2452at 2483.762 kb on - strand, within EX28DRAFT_2452at 2483.937 kb on + strandat 2483.981 kb on + strandat 2484.014 kb on - strandat 2484.172 kb on + strand, within EX28DRAFT_2453at 2484.172 kb on + strand, within EX28DRAFT_2453at 2484.360 kb on - strand, within EX28DRAFT_2453at 2484.388 kb on - strand, within EX28DRAFT_2453at 2484.487 kb on - strandat 2484.582 kb on + strandat 2484.583 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,481,972 - EX28DRAFT_2451 0.45 -0.2
2,482,064 + EX28DRAFT_2451 0.52 -0.5
2,482,064 + EX28DRAFT_2451 0.52 -0.4
2,482,142 + EX28DRAFT_2451 0.57 +2.7
2,482,243 + EX28DRAFT_2451 0.64 +0.0
2,482,304 + EX28DRAFT_2451 0.68 -2.9
2,482,304 + EX28DRAFT_2451 0.68 -1.4
2,482,305 - EX28DRAFT_2451 0.68 -0.4
2,482,305 - EX28DRAFT_2451 0.68 +0.2
2,482,305 - EX28DRAFT_2451 0.68 -1.6
2,482,316 + EX28DRAFT_2451 0.68 +0.7
2,482,316 + EX28DRAFT_2451 0.68 +0.2
2,482,316 + EX28DRAFT_2451 0.68 -0.3
2,482,316 + EX28DRAFT_2451 0.68 -0.1
2,482,317 - EX28DRAFT_2451 0.68 -0.1
2,482,317 - EX28DRAFT_2451 0.68 -0.1
2,482,367 + EX28DRAFT_2451 0.72 +0.7
2,482,458 - EX28DRAFT_2451 0.78 -0.1
2,482,787 + +0.5
2,482,790 + -1.0
2,482,791 - +0.3
2,482,791 - -0.1
2,483,014 + EX28DRAFT_2452 0.14 -1.5
2,483,022 + EX28DRAFT_2452 0.14 +1.6
2,483,149 + EX28DRAFT_2452 0.27 -0.2
2,483,151 + EX28DRAFT_2452 0.27 +0.6
2,483,152 - EX28DRAFT_2452 0.27 -0.3
2,483,214 + EX28DRAFT_2452 0.33 +0.3
2,483,243 - EX28DRAFT_2452 0.36 -0.3
2,483,392 + EX28DRAFT_2452 0.51 -0.4
2,483,426 - EX28DRAFT_2452 0.54 -0.2
2,483,521 + EX28DRAFT_2452 0.63 -2.6
2,483,724 + EX28DRAFT_2452 0.83 +0.6
2,483,725 - EX28DRAFT_2452 0.83 -0.2
2,483,725 - EX28DRAFT_2452 0.83 -2.8
2,483,761 + EX28DRAFT_2452 0.87 -0.3
2,483,762 - EX28DRAFT_2452 0.87 -0.0
2,483,762 - EX28DRAFT_2452 0.87 -0.3
2,483,762 - EX28DRAFT_2452 0.87 +0.6
2,483,762 - EX28DRAFT_2452 0.87 -1.0
2,483,937 + +1.2
2,483,981 + -0.3
2,484,014 - -0.1
2,484,172 + EX28DRAFT_2453 0.39 -0.4
2,484,172 + EX28DRAFT_2453 0.39 +0.2
2,484,360 - EX28DRAFT_2453 0.75 +0.6
2,484,388 - EX28DRAFT_2453 0.81 -0.0
2,484,487 - +0.6
2,484,582 + +0.4
2,484,583 - +3.0

Or see this region's nucleotide sequence