Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2433 and EX28DRAFT_2434 are separated by 185 nucleotides EX28DRAFT_2434 and EX28DRAFT_2435 are separated by 149 nucleotides EX28DRAFT_2435 and EX28DRAFT_2436 are separated by 1 nucleotides
EX28DRAFT_2433: EX28DRAFT_2433 - TonB-dependent siderophore receptor, at 2,462,632 to 2,464,815
_2433
EX28DRAFT_2434: EX28DRAFT_2434 - Protein of unknown function (DUF1471), at 2,465,001 to 2,465,276
_2434
EX28DRAFT_2435: EX28DRAFT_2435 - ABC-type spermidine/putrescine transport systems, ATPase components, at 2,465,426 to 2,466,457
_2435
EX28DRAFT_2436: EX28DRAFT_2436 - ABC-type Fe3+ transport system, permease component, at 2,466,459 to 2,468,033
_2436
Position (kb)
2465
2466
2467 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2464.460 kb on + strand, within EX28DRAFT_2433 at 2464.568 kb on + strand, within EX28DRAFT_2433 at 2464.815 kb on + strand at 2464.815 kb on + strand at 2464.819 kb on + strand at 2464.819 kb on + strand at 2464.819 kb on + strand at 2464.820 kb on - strand at 2464.910 kb on - strand at 2464.916 kb on + strand at 2465.014 kb on + strand at 2465.040 kb on - strand, within EX28DRAFT_2434 at 2465.166 kb on - strand, within EX28DRAFT_2434 at 2465.167 kb on + strand, within EX28DRAFT_2434 at 2465.239 kb on - strand, within EX28DRAFT_2434 at 2465.239 kb on - strand, within EX28DRAFT_2434 at 2465.295 kb on + strand at 2465.427 kb on + strand at 2465.504 kb on + strand at 2465.630 kb on + strand, within EX28DRAFT_2435 at 2465.631 kb on - strand, within EX28DRAFT_2435 at 2465.794 kb on - strand, within EX28DRAFT_2435 at 2465.802 kb on + strand, within EX28DRAFT_2435 at 2465.802 kb on + strand, within EX28DRAFT_2435 at 2466.322 kb on + strand, within EX28DRAFT_2435 at 2466.489 kb on - strand at 2466.490 kb on + strand at 2466.490 kb on + strand at 2466.556 kb on + strand at 2466.556 kb on + strand at 2466.557 kb on - strand at 2466.557 kb on - strand at 2466.819 kb on - strand, within EX28DRAFT_2436 at 2466.832 kb on + strand, within EX28DRAFT_2436 at 2466.848 kb on + strand, within EX28DRAFT_2436 at 2466.848 kb on + strand, within EX28DRAFT_2436 at 2466.863 kb on - strand, within EX28DRAFT_2436 at 2466.940 kb on + strand, within EX28DRAFT_2436 at 2466.940 kb on + strand, within EX28DRAFT_2436 at 2466.940 kb on + strand, within EX28DRAFT_2436 at 2466.941 kb on - strand, within EX28DRAFT_2436 at 2466.941 kb on - strand, within EX28DRAFT_2436 at 2466.941 kb on - strand, within EX28DRAFT_2436 at 2466.941 kb on - strand, within EX28DRAFT_2436 at 2466.941 kb on - strand, within EX28DRAFT_2436 at 2466.941 kb on - strand, within EX28DRAFT_2436 at 2466.941 kb on - strand, within EX28DRAFT_2436 at 2467.134 kb on + strand, within EX28DRAFT_2436 at 2467.290 kb on + strand, within EX28DRAFT_2436 at 2467.290 kb on + strand, within EX28DRAFT_2436 at 2467.356 kb on - strand, within EX28DRAFT_2436 at 2467.420 kb on + strand, within EX28DRAFT_2436
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 2,464,460 + EX28DRAFT_2433 0.84 +0.3 2,464,568 + EX28DRAFT_2433 0.89 -1.2 2,464,815 + +0.3 2,464,815 + +0.1 2,464,819 + +1.4 2,464,819 + +0.5 2,464,819 + -0.5 2,464,820 - -2.8 2,464,910 - -0.4 2,464,916 + +2.1 2,465,014 + +0.3 2,465,040 - EX28DRAFT_2434 0.14 -1.4 2,465,166 - EX28DRAFT_2434 0.60 +0.5 2,465,167 + EX28DRAFT_2434 0.60 -0.3 2,465,239 - EX28DRAFT_2434 0.86 +0.1 2,465,239 - EX28DRAFT_2434 0.86 -0.1 2,465,295 + +0.2 2,465,427 + +1.8 2,465,504 + +0.1 2,465,630 + EX28DRAFT_2435 0.20 +0.4 2,465,631 - EX28DRAFT_2435 0.20 +0.5 2,465,794 - EX28DRAFT_2435 0.36 +0.1 2,465,802 + EX28DRAFT_2435 0.36 +0.0 2,465,802 + EX28DRAFT_2435 0.36 +0.7 2,466,322 + EX28DRAFT_2435 0.87 +0.4 2,466,489 - +0.4 2,466,490 + +0.9 2,466,490 + +0.1 2,466,556 + -0.6 2,466,556 + +0.5 2,466,557 - +0.9 2,466,557 - +0.1 2,466,819 - EX28DRAFT_2436 0.23 +0.7 2,466,832 + EX28DRAFT_2436 0.24 +0.5 2,466,848 + EX28DRAFT_2436 0.25 +0.4 2,466,848 + EX28DRAFT_2436 0.25 -1.0 2,466,863 - EX28DRAFT_2436 0.26 -0.2 2,466,940 + EX28DRAFT_2436 0.31 +0.1 2,466,940 + EX28DRAFT_2436 0.31 +0.5 2,466,940 + EX28DRAFT_2436 0.31 -0.4 2,466,941 - EX28DRAFT_2436 0.31 +0.1 2,466,941 - EX28DRAFT_2436 0.31 +0.2 2,466,941 - EX28DRAFT_2436 0.31 -0.8 2,466,941 - EX28DRAFT_2436 0.31 -0.9 2,466,941 - EX28DRAFT_2436 0.31 +0.3 2,466,941 - EX28DRAFT_2436 0.31 -1.0 2,466,941 - EX28DRAFT_2436 0.31 +0.7 2,467,134 + EX28DRAFT_2436 0.43 +1.7 2,467,290 + EX28DRAFT_2436 0.53 +0.1 2,467,290 + EX28DRAFT_2436 0.53 -1.0 2,467,356 - EX28DRAFT_2436 0.57 -0.0 2,467,420 + EX28DRAFT_2436 0.61 +0.2
Or see this region's nucleotide sequence