Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1345 and EX28DRAFT_1346 are separated by 121 nucleotides EX28DRAFT_1346 and EX28DRAFT_1347 are separated by 739 nucleotides
EX28DRAFT_1345: EX28DRAFT_1345 - Bacterial Ig-like domain (group 3)/Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella/Putative flagellar system-associated repeat, at 1,341,355 to 1,359,360
_1345
EX28DRAFT_1346: EX28DRAFT_1346 - type I secretion outer membrane protein, TolC family, at 1,359,482 to 1,360,819
_1346
EX28DRAFT_1347: EX28DRAFT_1347 - transcriptional regulator, DeoR family, at 1,361,559 to 1,362,302
_1347
Position (kb)
1359
1360
1361 Strain fitness (log2 ratio)
-1
0
1
2 at 1358.569 kb on - strand at 1358.647 kb on + strand at 1358.647 kb on + strand at 1358.648 kb on - strand at 1359.009 kb on + strand at 1359.082 kb on - strand at 1359.082 kb on - strand at 1359.152 kb on + strand at 1359.187 kb on - strand at 1359.189 kb on - strand at 1359.415 kb on + strand at 1359.415 kb on + strand at 1359.416 kb on - strand at 1359.416 kb on - strand at 1359.416 kb on - strand at 1359.416 kb on - strand at 1359.566 kb on - strand at 1359.588 kb on + strand at 1359.600 kb on - strand at 1359.675 kb on + strand, within EX28DRAFT_1346 at 1359.685 kb on + strand, within EX28DRAFT_1346 at 1359.686 kb on - strand, within EX28DRAFT_1346 at 1359.908 kb on + strand, within EX28DRAFT_1346 at 1359.909 kb on - strand, within EX28DRAFT_1346 at 1360.011 kb on + strand, within EX28DRAFT_1346 at 1360.059 kb on - strand, within EX28DRAFT_1346 at 1360.065 kb on + strand, within EX28DRAFT_1346 at 1360.065 kb on + strand, within EX28DRAFT_1346 at 1360.066 kb on - strand, within EX28DRAFT_1346 at 1360.073 kb on - strand, within EX28DRAFT_1346 at 1360.073 kb on - strand, within EX28DRAFT_1346 at 1360.188 kb on + strand, within EX28DRAFT_1346 at 1360.311 kb on - strand, within EX28DRAFT_1346 at 1360.362 kb on + strand, within EX28DRAFT_1346 at 1360.363 kb on - strand, within EX28DRAFT_1346 at 1360.363 kb on - strand, within EX28DRAFT_1346 at 1360.575 kb on - strand, within EX28DRAFT_1346 at 1360.625 kb on - strand, within EX28DRAFT_1346 at 1360.628 kb on + strand, within EX28DRAFT_1346 at 1360.718 kb on - strand at 1360.730 kb on - strand at 1360.733 kb on - strand at 1360.869 kb on + strand at 1360.896 kb on + strand at 1360.897 kb on - strand at 1360.996 kb on + strand at 1361.128 kb on - strand at 1361.351 kb on - strand at 1361.419 kb on + strand at 1361.420 kb on - strand at 1361.583 kb on + strand at 1361.583 kb on + strand at 1361.584 kb on - strand at 1361.584 kb on - strand at 1361.660 kb on + strand, within EX28DRAFT_1347
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 1,358,569 - -1.2 1,358,647 + -0.0 1,358,647 + +1.0 1,358,648 - +0.6 1,359,009 + +0.0 1,359,082 - -0.1 1,359,082 - -0.6 1,359,152 + +1.2 1,359,187 - -0.2 1,359,189 - -0.1 1,359,415 + -0.7 1,359,415 + +0.7 1,359,416 - -0.1 1,359,416 - -0.6 1,359,416 - -0.7 1,359,416 - -1.3 1,359,566 - -0.3 1,359,588 + -0.1 1,359,600 - +0.5 1,359,675 + EX28DRAFT_1346 0.14 -0.9 1,359,685 + EX28DRAFT_1346 0.15 -0.1 1,359,686 - EX28DRAFT_1346 0.15 -0.6 1,359,908 + EX28DRAFT_1346 0.32 +1.5 1,359,909 - EX28DRAFT_1346 0.32 -0.4 1,360,011 + EX28DRAFT_1346 0.40 -0.5 1,360,059 - EX28DRAFT_1346 0.43 +0.9 1,360,065 + EX28DRAFT_1346 0.44 -0.7 1,360,065 + EX28DRAFT_1346 0.44 +2.3 1,360,066 - EX28DRAFT_1346 0.44 +0.8 1,360,073 - EX28DRAFT_1346 0.44 -0.4 1,360,073 - EX28DRAFT_1346 0.44 +1.5 1,360,188 + EX28DRAFT_1346 0.53 -0.3 1,360,311 - EX28DRAFT_1346 0.62 +0.1 1,360,362 + EX28DRAFT_1346 0.66 -1.4 1,360,363 - EX28DRAFT_1346 0.66 +1.8 1,360,363 - EX28DRAFT_1346 0.66 +1.1 1,360,575 - EX28DRAFT_1346 0.82 -0.3 1,360,625 - EX28DRAFT_1346 0.85 -1.2 1,360,628 + EX28DRAFT_1346 0.86 -1.7 1,360,718 - +0.1 1,360,730 - +0.4 1,360,733 - -0.1 1,360,869 + -0.1 1,360,896 + -0.5 1,360,897 - -0.3 1,360,996 + +1.2 1,361,128 - -0.1 1,361,351 - +0.0 1,361,419 + -0.0 1,361,420 - +0.8 1,361,583 + +0.1 1,361,583 + +0.2 1,361,584 - -1.1 1,361,584 - +0.3 1,361,660 + EX28DRAFT_1347 0.14 -0.8
Or see this region's nucleotide sequence