Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0995 and EX28DRAFT_0996 are separated by 275 nucleotides EX28DRAFT_0996 and EX28DRAFT_0997 are separated by 107 nucleotides
EX28DRAFT_0995: EX28DRAFT_0995 - Domain of unknown function (DUF4432), at 998,383 to 999,591
_0995
EX28DRAFT_0996: EX28DRAFT_0996 - Peroxiredoxin, at 999,867 to 1,000,373
_0996
EX28DRAFT_0997: EX28DRAFT_0997 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 1,000,481 to 1,001,446
_0997
Position (kb) 999
1000
1001 Strain fitness (log2 ratio) -2
-1
0
1
2 at 998.909 kb on + strand, within EX28DRAFT_0995 at 998.910 kb on - strand, within EX28DRAFT_0995 at 998.910 kb on - strand, within EX28DRAFT_0995 at 998.910 kb on - strand, within EX28DRAFT_0995 at 998.990 kb on + strand, within EX28DRAFT_0995 at 998.990 kb on + strand, within EX28DRAFT_0995 at 998.991 kb on - strand, within EX28DRAFT_0995 at 999.028 kb on - strand, within EX28DRAFT_0995 at 999.114 kb on + strand, within EX28DRAFT_0995 at 999.114 kb on + strand, within EX28DRAFT_0995 at 999.141 kb on - strand, within EX28DRAFT_0995 at 999.182 kb on + strand, within EX28DRAFT_0995 at 999.252 kb on + strand, within EX28DRAFT_0995 at 999.252 kb on + strand, within EX28DRAFT_0995 at 999.253 kb on - strand, within EX28DRAFT_0995 at 999.253 kb on - strand, within EX28DRAFT_0995 at 999.254 kb on + strand, within EX28DRAFT_0995 at 999.254 kb on + strand, within EX28DRAFT_0995 at 999.255 kb on - strand, within EX28DRAFT_0995 at 999.317 kb on - strand, within EX28DRAFT_0995 at 999.317 kb on - strand, within EX28DRAFT_0995 at 999.378 kb on + strand, within EX28DRAFT_0995 at 999.593 kb on + strand at 999.847 kb on + strand at 999.849 kb on + strand at 999.850 kb on - strand at 999.865 kb on + strand at 1000.064 kb on + strand, within EX28DRAFT_0996 at 1000.065 kb on - strand, within EX28DRAFT_0996 at 1000.175 kb on + strand, within EX28DRAFT_0996 at 1000.289 kb on + strand, within EX28DRAFT_0996 at 1000.373 kb on + strand at 1000.373 kb on + strand at 1000.374 kb on - strand at 1000.374 kb on - strand at 1000.374 kb on - strand at 1000.374 kb on - strand at 1000.377 kb on + strand at 1000.378 kb on - strand at 1000.390 kb on - strand at 1000.393 kb on + strand at 1000.393 kb on + strand at 1000.394 kb on - strand at 1000.394 kb on - strand at 1000.395 kb on + strand at 1000.396 kb on - strand at 1000.396 kb on - strand at 1000.396 kb on - strand at 1000.416 kb on + strand at 1000.416 kb on + strand at 1000.417 kb on - strand at 1000.500 kb on - strand at 1000.523 kb on - strand at 1000.615 kb on + strand, within EX28DRAFT_0997 at 1000.616 kb on - strand, within EX28DRAFT_0997 at 1000.664 kb on - strand, within EX28DRAFT_0997
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 998,909 + EX28DRAFT_0995 0.44 +1.2 998,910 - EX28DRAFT_0995 0.44 -0.9 998,910 - EX28DRAFT_0995 0.44 -0.1 998,910 - EX28DRAFT_0995 0.44 +0.1 998,990 + EX28DRAFT_0995 0.50 +0.3 998,990 + EX28DRAFT_0995 0.50 -1.1 998,991 - EX28DRAFT_0995 0.50 -0.1 999,028 - EX28DRAFT_0995 0.53 +0.1 999,114 + EX28DRAFT_0995 0.60 -0.8 999,114 + EX28DRAFT_0995 0.60 -1.1 999,141 - EX28DRAFT_0995 0.63 +1.7 999,182 + EX28DRAFT_0995 0.66 +0.6 999,252 + EX28DRAFT_0995 0.72 +0.3 999,252 + EX28DRAFT_0995 0.72 +0.1 999,253 - EX28DRAFT_0995 0.72 +0.1 999,253 - EX28DRAFT_0995 0.72 +0.6 999,254 + EX28DRAFT_0995 0.72 +1.7 999,254 + EX28DRAFT_0995 0.72 +0.2 999,255 - EX28DRAFT_0995 0.72 +1.0 999,317 - EX28DRAFT_0995 0.77 +0.6 999,317 - EX28DRAFT_0995 0.77 +0.1 999,378 + EX28DRAFT_0995 0.82 +1.1 999,593 + +0.4 999,847 + +0.9 999,849 + +0.3 999,850 - +0.7 999,865 + -0.1 1,000,064 + EX28DRAFT_0996 0.39 +0.5 1,000,065 - EX28DRAFT_0996 0.39 +2.5 1,000,175 + EX28DRAFT_0996 0.61 -0.1 1,000,289 + EX28DRAFT_0996 0.83 +0.1 1,000,373 + +0.7 1,000,373 + -0.4 1,000,374 - -1.9 1,000,374 - -0.4 1,000,374 - +0.2 1,000,374 - -0.3 1,000,377 + -0.2 1,000,378 - +0.3 1,000,390 - +0.6 1,000,393 + -0.9 1,000,393 + -0.1 1,000,394 - +0.3 1,000,394 - +0.5 1,000,395 + -0.6 1,000,396 - +1.1 1,000,396 - -0.4 1,000,396 - +0.7 1,000,416 + +0.4 1,000,416 + -0.3 1,000,417 - -1.3 1,000,500 - -0.4 1,000,523 - -0.4 1,000,615 + EX28DRAFT_0997 0.14 +0.5 1,000,616 - EX28DRAFT_0997 0.14 +0.7 1,000,664 - EX28DRAFT_0997 0.19 -0.1
Or see this region's nucleotide sequence