Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0367 and EX28DRAFT_0368 are separated by 187 nucleotides EX28DRAFT_0368 and EX28DRAFT_0369 are separated by 135 nucleotides EX28DRAFT_0369 and EX28DRAFT_0370 are separated by 209 nucleotides
EX28DRAFT_0367: EX28DRAFT_0367 - Sulfate permease and related transporters (MFS superfamily), at 338,481 to 339,770
_0367
EX28DRAFT_0368: EX28DRAFT_0368 - malate:quinone-oxidoreductase, at 339,958 to 341,607
_0368
EX28DRAFT_0369: EX28DRAFT_0369 - Serine protease inhibitor ecotin, at 341,743 to 342,246
_0369
EX28DRAFT_0370: EX28DRAFT_0370 - Protein of unknown function (DUF2534), at 342,456 to 342,716
_0370
Position (kb) 339
340
341
342 Strain fitness (log2 ratio) -1
0
1 at 339.029 kb on + strand, within EX28DRAFT_0367 at 339.030 kb on - strand, within EX28DRAFT_0367 at 339.196 kb on + strand, within EX28DRAFT_0367 at 339.341 kb on + strand, within EX28DRAFT_0367 at 339.341 kb on + strand, within EX28DRAFT_0367 at 339.422 kb on - strand, within EX28DRAFT_0367 at 339.422 kb on - strand, within EX28DRAFT_0367 at 339.422 kb on - strand, within EX28DRAFT_0367 at 339.422 kb on - strand, within EX28DRAFT_0367 at 339.426 kb on + strand, within EX28DRAFT_0367 at 339.717 kb on - strand at 339.771 kb on - strand at 339.771 kb on - strand at 339.774 kb on - strand at 339.873 kb on + strand at 339.945 kb on + strand at 339.952 kb on + strand at 340.103 kb on - strand at 340.103 kb on - strand at 340.132 kb on - strand, within EX28DRAFT_0368 at 340.132 kb on - strand, within EX28DRAFT_0368 at 340.132 kb on - strand, within EX28DRAFT_0368 at 340.228 kb on + strand, within EX28DRAFT_0368 at 340.228 kb on + strand, within EX28DRAFT_0368 at 340.229 kb on - strand, within EX28DRAFT_0368 at 340.231 kb on - strand, within EX28DRAFT_0368 at 340.231 kb on - strand, within EX28DRAFT_0368 at 340.258 kb on - strand, within EX28DRAFT_0368 at 340.260 kb on + strand, within EX28DRAFT_0368 at 340.261 kb on - strand, within EX28DRAFT_0368 at 340.468 kb on + strand, within EX28DRAFT_0368 at 340.575 kb on + strand, within EX28DRAFT_0368 at 340.579 kb on + strand, within EX28DRAFT_0368 at 340.897 kb on + strand, within EX28DRAFT_0368 at 340.954 kb on - strand, within EX28DRAFT_0368 at 341.062 kb on - strand, within EX28DRAFT_0368 at 341.094 kb on + strand, within EX28DRAFT_0368 at 341.113 kb on + strand, within EX28DRAFT_0368 at 341.170 kb on + strand, within EX28DRAFT_0368 at 341.170 kb on + strand, within EX28DRAFT_0368 at 341.173 kb on + strand, within EX28DRAFT_0368 at 341.301 kb on + strand, within EX28DRAFT_0368 at 341.382 kb on + strand, within EX28DRAFT_0368 at 341.518 kb on + strand at 341.518 kb on + strand at 341.519 kb on - strand at 341.749 kb on + strand at 341.750 kb on - strand at 341.819 kb on + strand, within EX28DRAFT_0369 at 341.820 kb on - strand, within EX28DRAFT_0369 at 341.820 kb on - strand, within EX28DRAFT_0369 at 341.820 kb on - strand, within EX28DRAFT_0369 at 341.846 kb on + strand, within EX28DRAFT_0369 at 341.874 kb on - strand, within EX28DRAFT_0369 at 341.958 kb on - strand, within EX28DRAFT_0369 at 342.063 kb on + strand, within EX28DRAFT_0369 at 342.258 kb on + strand at 342.259 kb on - strand at 342.316 kb on - strand at 342.421 kb on + strand at 342.421 kb on + strand at 342.421 kb on + strand at 342.422 kb on - strand at 342.423 kb on + strand at 342.425 kb on + strand at 342.425 kb on + strand at 342.426 kb on - strand at 342.426 kb on - strand at 342.426 kb on - strand at 342.426 kb on - strand at 342.431 kb on + strand at 342.432 kb on - strand at 342.518 kb on - strand, within EX28DRAFT_0370 at 342.521 kb on + strand, within EX28DRAFT_0370 at 342.521 kb on + strand, within EX28DRAFT_0370 at 342.576 kb on + strand, within EX28DRAFT_0370 at 342.576 kb on + strand, within EX28DRAFT_0370 at 342.577 kb on - strand, within EX28DRAFT_0370 at 342.577 kb on - strand, within EX28DRAFT_0370 at 342.581 kb on + strand, within EX28DRAFT_0370 at 342.581 kb on + strand, within EX28DRAFT_0370 at 342.581 kb on + strand, within EX28DRAFT_0370
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 339,029 + EX28DRAFT_0367 0.42 +0.1 339,030 - EX28DRAFT_0367 0.43 +1.2 339,196 + EX28DRAFT_0367 0.55 -0.6 339,341 + EX28DRAFT_0367 0.67 +0.1 339,341 + EX28DRAFT_0367 0.67 +0.4 339,422 - EX28DRAFT_0367 0.73 -1.7 339,422 - EX28DRAFT_0367 0.73 -1.4 339,422 - EX28DRAFT_0367 0.73 +0.0 339,422 - EX28DRAFT_0367 0.73 -0.3 339,426 + EX28DRAFT_0367 0.73 -0.8 339,717 - -0.2 339,771 - +0.1 339,771 - +0.3 339,774 - -0.3 339,873 + -1.1 339,945 + +0.6 339,952 + +1.4 340,103 - -0.1 340,103 - +0.7 340,132 - EX28DRAFT_0368 0.11 -0.1 340,132 - EX28DRAFT_0368 0.11 -0.2 340,132 - EX28DRAFT_0368 0.11 +0.0 340,228 + EX28DRAFT_0368 0.16 +0.6 340,228 + EX28DRAFT_0368 0.16 -0.2 340,229 - EX28DRAFT_0368 0.16 -0.9 340,231 - EX28DRAFT_0368 0.17 +0.1 340,231 - EX28DRAFT_0368 0.17 -0.9 340,258 - EX28DRAFT_0368 0.18 -0.2 340,260 + EX28DRAFT_0368 0.18 -0.3 340,261 - EX28DRAFT_0368 0.18 -0.5 340,468 + EX28DRAFT_0368 0.31 -0.1 340,575 + EX28DRAFT_0368 0.37 +0.0 340,579 + EX28DRAFT_0368 0.38 +0.2 340,897 + EX28DRAFT_0368 0.57 -0.5 340,954 - EX28DRAFT_0368 0.60 -0.1 341,062 - EX28DRAFT_0368 0.67 -0.2 341,094 + EX28DRAFT_0368 0.69 -0.5 341,113 + EX28DRAFT_0368 0.70 -0.9 341,170 + EX28DRAFT_0368 0.73 +0.0 341,170 + EX28DRAFT_0368 0.73 -0.3 341,173 + EX28DRAFT_0368 0.74 +0.6 341,301 + EX28DRAFT_0368 0.81 +0.4 341,382 + EX28DRAFT_0368 0.86 +0.4 341,518 + +0.2 341,518 + +0.1 341,519 - -1.0 341,749 + +0.1 341,750 - +0.7 341,819 + EX28DRAFT_0369 0.15 -0.3 341,820 - EX28DRAFT_0369 0.15 -0.6 341,820 - EX28DRAFT_0369 0.15 -0.9 341,820 - EX28DRAFT_0369 0.15 +0.1 341,846 + EX28DRAFT_0369 0.20 +0.3 341,874 - EX28DRAFT_0369 0.26 -0.1 341,958 - EX28DRAFT_0369 0.43 -0.3 342,063 + EX28DRAFT_0369 0.63 -0.2 342,258 + +0.0 342,259 - -0.6 342,316 - +0.3 342,421 + +0.2 342,421 + -0.6 342,421 + +0.3 342,422 - -0.1 342,423 + -0.2 342,425 + +0.1 342,425 + -0.0 342,426 - -0.2 342,426 - -0.1 342,426 - +0.0 342,426 - +0.3 342,431 + -0.7 342,432 - +0.2 342,518 - EX28DRAFT_0370 0.24 -0.2 342,521 + EX28DRAFT_0370 0.25 -0.7 342,521 + EX28DRAFT_0370 0.25 -0.6 342,576 + EX28DRAFT_0370 0.46 -1.1 342,576 + EX28DRAFT_0370 0.46 +0.1 342,577 - EX28DRAFT_0370 0.46 +0.4 342,577 - EX28DRAFT_0370 0.46 +0.7 342,581 + EX28DRAFT_0370 0.48 -0.9 342,581 + EX28DRAFT_0370 0.48 -0.1 342,581 + EX28DRAFT_0370 0.48 -0.1
Or see this region's nucleotide sequence