Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0240 and EX28DRAFT_0241 are separated by 482 nucleotides EX28DRAFT_0241 and EX28DRAFT_0242 are separated by 786 nucleotides
EX28DRAFT_0240: EX28DRAFT_0240 - Aspartate/tyrosine/aromatic aminotransferase, at 193,111 to 194,349
_0240
EX28DRAFT_0241: EX28DRAFT_0241 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase, at 194,832 to 195,749
_0241
EX28DRAFT_0242: EX28DRAFT_0242 - type VI secretion protein, VC_A0107 family, at 196,536 to 197,033
_0242
Position (kb) 194
195
196 Strain fitness (log2 ratio) -2
-1
0
1
2 at 193.867 kb on - strand, within EX28DRAFT_0240 at 193.875 kb on + strand, within EX28DRAFT_0240 at 193.875 kb on + strand, within EX28DRAFT_0240 at 193.925 kb on - strand, within EX28DRAFT_0240 at 193.938 kb on + strand, within EX28DRAFT_0240 at 194.018 kb on - strand, within EX28DRAFT_0240 at 194.019 kb on + strand, within EX28DRAFT_0240 at 194.019 kb on + strand, within EX28DRAFT_0240 at 194.020 kb on - strand, within EX28DRAFT_0240 at 194.095 kb on + strand, within EX28DRAFT_0240 at 194.096 kb on - strand, within EX28DRAFT_0240 at 194.096 kb on - strand, within EX28DRAFT_0240 at 194.122 kb on + strand, within EX28DRAFT_0240 at 194.122 kb on + strand, within EX28DRAFT_0240 at 194.123 kb on - strand, within EX28DRAFT_0240 at 194.403 kb on + strand at 194.435 kb on + strand at 194.436 kb on - strand at 194.508 kb on + strand at 194.508 kb on + strand at 194.531 kb on + strand at 194.634 kb on + strand at 194.767 kb on + strand at 194.893 kb on + strand at 194.971 kb on + strand, within EX28DRAFT_0241 at 195.015 kb on - strand, within EX28DRAFT_0241 at 195.138 kb on - strand, within EX28DRAFT_0241 at 195.138 kb on - strand, within EX28DRAFT_0241 at 195.145 kb on + strand, within EX28DRAFT_0241 at 195.216 kb on - strand, within EX28DRAFT_0241 at 195.273 kb on - strand, within EX28DRAFT_0241 at 195.295 kb on + strand, within EX28DRAFT_0241 at 195.296 kb on - strand, within EX28DRAFT_0241 at 195.296 kb on - strand, within EX28DRAFT_0241 at 195.353 kb on + strand, within EX28DRAFT_0241 at 195.353 kb on + strand, within EX28DRAFT_0241 at 195.545 kb on - strand, within EX28DRAFT_0241 at 195.679 kb on - strand at 195.698 kb on + strand at 195.698 kb on + strand at 195.699 kb on - strand at 195.756 kb on - strand at 195.763 kb on - strand at 195.763 kb on - strand at 195.775 kb on + strand at 195.782 kb on - strand at 195.900 kb on + strand at 195.901 kb on - strand at 195.911 kb on + strand at 195.912 kb on - strand at 195.916 kb on + strand at 195.924 kb on - strand at 195.924 kb on - strand at 196.445 kb on + strand at 196.595 kb on - strand, within EX28DRAFT_0242
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 193,867 - EX28DRAFT_0240 0.61 -1.0 193,875 + EX28DRAFT_0240 0.62 +0.4 193,875 + EX28DRAFT_0240 0.62 -0.4 193,925 - EX28DRAFT_0240 0.66 -0.3 193,938 + EX28DRAFT_0240 0.67 +0.6 194,018 - EX28DRAFT_0240 0.73 -1.1 194,019 + EX28DRAFT_0240 0.73 -0.8 194,019 + EX28DRAFT_0240 0.73 +0.3 194,020 - EX28DRAFT_0240 0.73 +1.4 194,095 + EX28DRAFT_0240 0.79 -1.1 194,096 - EX28DRAFT_0240 0.79 -1.1 194,096 - EX28DRAFT_0240 0.79 +0.4 194,122 + EX28DRAFT_0240 0.82 +0.0 194,122 + EX28DRAFT_0240 0.82 +0.0 194,123 - EX28DRAFT_0240 0.82 +1.1 194,403 + +0.2 194,435 + -0.4 194,436 - -0.9 194,508 + +0.9 194,508 + +0.8 194,531 + +0.5 194,634 + +0.3 194,767 + +0.6 194,893 + +0.9 194,971 + EX28DRAFT_0241 0.15 -0.3 195,015 - EX28DRAFT_0241 0.20 +1.3 195,138 - EX28DRAFT_0241 0.33 +0.5 195,138 - EX28DRAFT_0241 0.33 +0.1 195,145 + EX28DRAFT_0241 0.34 -0.4 195,216 - EX28DRAFT_0241 0.42 -2.1 195,273 - EX28DRAFT_0241 0.48 +0.5 195,295 + EX28DRAFT_0241 0.50 -0.2 195,296 - EX28DRAFT_0241 0.51 +1.5 195,296 - EX28DRAFT_0241 0.51 -1.8 195,353 + EX28DRAFT_0241 0.57 +0.2 195,353 + EX28DRAFT_0241 0.57 -0.7 195,545 - EX28DRAFT_0241 0.78 +0.1 195,679 - +0.8 195,698 + +2.7 195,698 + -0.9 195,699 - +0.2 195,756 - -0.7 195,763 - +0.0 195,763 - -0.1 195,775 + +0.3 195,782 - +0.4 195,900 + +0.4 195,901 - -0.0 195,911 + -0.2 195,912 - -0.4 195,916 + -0.8 195,924 - -0.4 195,924 - +0.7 196,445 + -0.3 196,595 - EX28DRAFT_0242 0.12 -0.5
Or see this region's nucleotide sequence