Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0153

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0152 and EX28DRAFT_0153 are separated by 8 nucleotidesEX28DRAFT_0153 and EX28DRAFT_0154 are separated by 12 nucleotides EX28DRAFT_0152: EX28DRAFT_0152 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 98,401 to 99,429 _0152 EX28DRAFT_0153: EX28DRAFT_0153 - Predicted dehydrogenases and related proteins, at 99,438 to 100,571 _0153 EX28DRAFT_0154: EX28DRAFT_0154 - Uncharacterized protein conserved in bacteria, at 100,584 to 102,488 _0154 Position (kb) 99 100 101Strain fitness (log2 ratio) -2 -1 0 1at 98.556 kb on + strand, within EX28DRAFT_0152at 98.587 kb on + strand, within EX28DRAFT_0152at 98.686 kb on + strand, within EX28DRAFT_0152at 98.964 kb on + strand, within EX28DRAFT_0152at 98.965 kb on - strand, within EX28DRAFT_0152at 98.970 kb on + strand, within EX28DRAFT_0152at 99.044 kb on - strand, within EX28DRAFT_0152at 99.116 kb on - strand, within EX28DRAFT_0152at 99.344 kb on - strandat 99.346 kb on + strandat 99.369 kb on - strandat 99.369 kb on - strandat 99.369 kb on - strandat 99.373 kb on - strandat 99.396 kb on + strandat 99.400 kb on + strandat 99.401 kb on - strandat 99.401 kb on - strandat 99.452 kb on + strandat 99.460 kb on + strandat 99.475 kb on - strandat 99.502 kb on - strandat 99.668 kb on + strand, within EX28DRAFT_0153at 99.736 kb on - strand, within EX28DRAFT_0153at 99.831 kb on + strand, within EX28DRAFT_0153at 99.831 kb on + strand, within EX28DRAFT_0153at 99.832 kb on - strand, within EX28DRAFT_0153at 99.832 kb on - strand, within EX28DRAFT_0153at 99.832 kb on - strand, within EX28DRAFT_0153at 99.927 kb on + strand, within EX28DRAFT_0153at 99.927 kb on + strand, within EX28DRAFT_0153at 99.927 kb on + strand, within EX28DRAFT_0153at 99.927 kb on + strand, within EX28DRAFT_0153at 99.927 kb on + strand, within EX28DRAFT_0153at 99.927 kb on + strand, within EX28DRAFT_0153at 99.928 kb on - strand, within EX28DRAFT_0153at 99.928 kb on - strand, within EX28DRAFT_0153at 99.928 kb on - strand, within EX28DRAFT_0153at 99.930 kb on - strand, within EX28DRAFT_0153at 100.231 kb on - strand, within EX28DRAFT_0153at 100.231 kb on - strand, within EX28DRAFT_0153at 100.296 kb on + strand, within EX28DRAFT_0153at 100.296 kb on + strand, within EX28DRAFT_0153at 100.297 kb on - strand, within EX28DRAFT_0153at 100.577 kb on + strandat 100.636 kb on - strandat 100.636 kb on - strandat 100.775 kb on + strand, within EX28DRAFT_0154at 100.775 kb on + strand, within EX28DRAFT_0154at 100.775 kb on + strand, within EX28DRAFT_0154at 100.776 kb on - strand, within EX28DRAFT_0154at 100.776 kb on - strand, within EX28DRAFT_0154at 100.776 kb on - strand, within EX28DRAFT_0154at 100.962 kb on + strand, within EX28DRAFT_0154at 100.962 kb on + strand, within EX28DRAFT_0154at 100.962 kb on + strand, within EX28DRAFT_0154at 100.963 kb on - strand, within EX28DRAFT_0154at 100.963 kb on - strand, within EX28DRAFT_0154at 100.963 kb on - strand, within EX28DRAFT_0154at 100.963 kb on - strand, within EX28DRAFT_0154at 101.050 kb on - strand, within EX28DRAFT_0154at 101.050 kb on - strand, within EX28DRAFT_0154at 101.068 kb on + strand, within EX28DRAFT_0154at 101.123 kb on - strand, within EX28DRAFT_0154

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
remove
98,556 + EX28DRAFT_0152 0.15 +0.5
98,587 + EX28DRAFT_0152 0.18 +0.1
98,686 + EX28DRAFT_0152 0.28 +0.1
98,964 + EX28DRAFT_0152 0.55 +0.0
98,965 - EX28DRAFT_0152 0.55 +0.3
98,970 + EX28DRAFT_0152 0.55 +0.1
99,044 - EX28DRAFT_0152 0.62 -0.6
99,116 - EX28DRAFT_0152 0.69 -0.9
99,344 - -0.1
99,346 + +0.8
99,369 - -0.2
99,369 - -0.5
99,369 - +0.4
99,373 - -0.7
99,396 + -1.1
99,400 + -0.4
99,401 - -0.4
99,401 - -0.4
99,452 + -0.2
99,460 + -0.3
99,475 - -0.3
99,502 - -0.4
99,668 + EX28DRAFT_0153 0.20 +1.5
99,736 - EX28DRAFT_0153 0.26 +1.4
99,831 + EX28DRAFT_0153 0.35 -0.1
99,831 + EX28DRAFT_0153 0.35 -0.2
99,832 - EX28DRAFT_0153 0.35 -0.1
99,832 - EX28DRAFT_0153 0.35 +0.4
99,832 - EX28DRAFT_0153 0.35 +0.0
99,927 + EX28DRAFT_0153 0.43 +0.4
99,927 + EX28DRAFT_0153 0.43 +0.3
99,927 + EX28DRAFT_0153 0.43 -2.1
99,927 + EX28DRAFT_0153 0.43 +0.5
99,927 + EX28DRAFT_0153 0.43 -0.1
99,927 + EX28DRAFT_0153 0.43 -1.5
99,928 - EX28DRAFT_0153 0.43 +0.1
99,928 - EX28DRAFT_0153 0.43 +0.9
99,928 - EX28DRAFT_0153 0.43 -0.8
99,930 - EX28DRAFT_0153 0.43 +0.4
100,231 - EX28DRAFT_0153 0.70 +0.1
100,231 - EX28DRAFT_0153 0.70 +0.6
100,296 + EX28DRAFT_0153 0.76 -0.1
100,296 + EX28DRAFT_0153 0.76 +0.5
100,297 - EX28DRAFT_0153 0.76 +0.6
100,577 + -0.2
100,636 - -0.1
100,636 - +0.2
100,775 + EX28DRAFT_0154 0.10 +0.1
100,775 + EX28DRAFT_0154 0.10 +0.1
100,775 + EX28DRAFT_0154 0.10 -0.1
100,776 - EX28DRAFT_0154 0.10 +0.5
100,776 - EX28DRAFT_0154 0.10 -0.4
100,776 - EX28DRAFT_0154 0.10 -0.9
100,962 + EX28DRAFT_0154 0.20 -0.2
100,962 + EX28DRAFT_0154 0.20 -0.4
100,962 + EX28DRAFT_0154 0.20 +0.2
100,963 - EX28DRAFT_0154 0.20 -0.1
100,963 - EX28DRAFT_0154 0.20 +0.3
100,963 - EX28DRAFT_0154 0.20 -1.4
100,963 - EX28DRAFT_0154 0.20 -0.2
101,050 - EX28DRAFT_0154 0.24 +0.2
101,050 - EX28DRAFT_0154 0.24 -0.6
101,068 + EX28DRAFT_0154 0.25 -0.1
101,123 - EX28DRAFT_0154 0.28 +0.4

Or see this region's nucleotide sequence