Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04216 and ECD_04217 are separated by 187 nucleotides ECD_04217 and ECD_04218 are separated by 45 nucleotides
ECD_04216: ECD_04216 - endonuclease R Type I restriction enzyme, at 4,490,365 to 4,493,877
_04216
ECD_04217: ECD_04217 - methylated adenine and cytosine restriction protein, at 4,494,065 to 4,494,979
_04217
ECD_04218: ECD_04218 - metal-binding GTPase, at 4,495,025 to 4,495,981
_04218
Position (kb)
4494
4495 Strain fitness (log2 ratio)
-1
0
1
2 at 4493.169 kb on + strand, within ECD_04216 at 4493.334 kb on + strand, within ECD_04216 at 4493.336 kb on + strand, within ECD_04216 at 4493.502 kb on - strand, within ECD_04216 at 4493.525 kb on + strand, within ECD_04216 at 4493.525 kb on + strand, within ECD_04216 at 4493.525 kb on + strand, within ECD_04216 at 4493.589 kb on - strand at 4493.620 kb on + strand at 4493.757 kb on + strand at 4493.758 kb on - strand at 4493.758 kb on - strand at 4493.825 kb on + strand at 4493.826 kb on - strand at 4493.829 kb on + strand at 4493.868 kb on + strand at 4493.882 kb on - strand at 4493.884 kb on + strand at 4493.885 kb on - strand at 4493.935 kb on - strand at 4493.935 kb on - strand at 4493.935 kb on - strand at 4494.021 kb on + strand at 4494.022 kb on - strand at 4494.022 kb on - strand at 4494.023 kb on + strand at 4494.023 kb on + strand at 4494.023 kb on + strand at 4494.024 kb on - strand at 4494.044 kb on - strand at 4494.061 kb on + strand at 4494.061 kb on + strand at 4494.064 kb on + strand at 4494.065 kb on - strand at 4494.077 kb on - strand at 4494.077 kb on - strand at 4494.080 kb on + strand at 4494.080 kb on + strand at 4494.081 kb on - strand at 4494.209 kb on - strand, within ECD_04217 at 4494.406 kb on + strand, within ECD_04217 at 4494.432 kb on + strand, within ECD_04217 at 4494.552 kb on + strand, within ECD_04217 at 4494.713 kb on + strand, within ECD_04217 at 4494.714 kb on - strand, within ECD_04217 at 4494.744 kb on + strand, within ECD_04217 at 4494.744 kb on + strand, within ECD_04217 at 4494.814 kb on + strand, within ECD_04217 at 4494.814 kb on + strand, within ECD_04217 at 4494.814 kb on + strand, within ECD_04217 at 4494.815 kb on - strand, within ECD_04217 at 4494.903 kb on + strand at 4494.904 kb on - strand at 4494.904 kb on - strand at 4494.921 kb on + strand at 4494.982 kb on + strand at 4495.026 kb on + strand at 4495.144 kb on - strand, within ECD_04218 at 4495.210 kb on - strand, within ECD_04218 at 4495.274 kb on - strand, within ECD_04218 at 4495.378 kb on + strand, within ECD_04218 at 4495.379 kb on - strand, within ECD_04218 at 4495.434 kb on + strand, within ECD_04218 at 4495.434 kb on + strand, within ECD_04218 at 4495.435 kb on - strand, within ECD_04218 at 4495.507 kb on + strand, within ECD_04218 at 4495.519 kb on + strand, within ECD_04218 at 4495.660 kb on + strand, within ECD_04218 at 4495.751 kb on + strand, within ECD_04218 at 4495.752 kb on - strand, within ECD_04218 at 4495.890 kb on + strand at 4495.907 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 4,493,169 + ECD_04216 0.80 +0.4 4,493,334 + ECD_04216 0.85 -1.0 4,493,336 + ECD_04216 0.85 +0.3 4,493,502 - ECD_04216 0.89 +0.1 4,493,525 + ECD_04216 0.90 -0.9 4,493,525 + ECD_04216 0.90 +0.2 4,493,525 + ECD_04216 0.90 +0.1 4,493,589 - -0.2 4,493,620 + -1.1 4,493,757 + +0.5 4,493,758 - -0.2 4,493,758 - +0.1 4,493,825 + +0.8 4,493,826 - +1.2 4,493,829 + +0.1 4,493,868 + +0.9 4,493,882 - +0.1 4,493,884 + +0.1 4,493,885 - +0.3 4,493,935 - +0.7 4,493,935 - +2.0 4,493,935 - +0.0 4,494,021 + +1.1 4,494,022 - +0.0 4,494,022 - +0.2 4,494,023 + -0.9 4,494,023 + +0.8 4,494,023 + +0.1 4,494,024 - +0.4 4,494,044 - +0.7 4,494,061 + -0.1 4,494,061 + -0.4 4,494,064 + +0.6 4,494,065 - +0.5 4,494,077 - +0.2 4,494,077 - +0.1 4,494,080 + +0.0 4,494,080 + +0.3 4,494,081 - -0.5 4,494,209 - ECD_04217 0.16 +0.1 4,494,406 + ECD_04217 0.37 -0.5 4,494,432 + ECD_04217 0.40 +2.4 4,494,552 + ECD_04217 0.53 +1.3 4,494,713 + ECD_04217 0.71 +0.9 4,494,714 - ECD_04217 0.71 +0.0 4,494,744 + ECD_04217 0.74 +0.3 4,494,744 + ECD_04217 0.74 +0.6 4,494,814 + ECD_04217 0.82 +0.3 4,494,814 + ECD_04217 0.82 +0.5 4,494,814 + ECD_04217 0.82 -0.4 4,494,815 - ECD_04217 0.82 -0.4 4,494,903 + +0.3 4,494,904 - -1.2 4,494,904 - +0.6 4,494,921 + +1.0 4,494,982 + -0.1 4,495,026 + +0.7 4,495,144 - ECD_04218 0.12 +0.6 4,495,210 - ECD_04218 0.19 +0.8 4,495,274 - ECD_04218 0.26 -1.2 4,495,378 + ECD_04218 0.37 +0.8 4,495,379 - ECD_04218 0.37 -0.1 4,495,434 + ECD_04218 0.43 -1.1 4,495,434 + ECD_04218 0.43 +0.5 4,495,435 - ECD_04218 0.43 -0.4 4,495,507 + ECD_04218 0.50 -0.3 4,495,519 + ECD_04218 0.52 -1.0 4,495,660 + ECD_04218 0.66 -0.2 4,495,751 + ECD_04218 0.76 -0.2 4,495,752 - ECD_04218 0.76 -0.1 4,495,890 + +1.3 4,495,907 - -0.0
Or see this region's nucleotide sequence