Strain Fitness in Escherichia coli BL21 around ECD_04217

Experiment: NophageControl

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_04216 and ECD_04217 are separated by 187 nucleotidesECD_04217 and ECD_04218 are separated by 45 nucleotides ECD_04216: ECD_04216 - endonuclease R Type I restriction enzyme, at 4,490,365 to 4,493,877 _04216 ECD_04217: ECD_04217 - methylated adenine and cytosine restriction protein, at 4,494,065 to 4,494,979 _04217 ECD_04218: ECD_04218 - metal-binding GTPase, at 4,495,025 to 4,495,981 _04218 Position (kb) 4494 4495Strain fitness (log2 ratio) -1 0 1 2at 4493.169 kb on + strand, within ECD_04216at 4493.334 kb on + strand, within ECD_04216at 4493.336 kb on + strand, within ECD_04216at 4493.502 kb on - strand, within ECD_04216at 4493.525 kb on + strand, within ECD_04216at 4493.525 kb on + strand, within ECD_04216at 4493.525 kb on + strand, within ECD_04216at 4493.589 kb on - strandat 4493.620 kb on + strandat 4493.757 kb on + strandat 4493.758 kb on - strandat 4493.758 kb on - strandat 4493.825 kb on + strandat 4493.826 kb on - strandat 4493.829 kb on + strandat 4493.868 kb on + strandat 4493.882 kb on - strandat 4493.884 kb on + strandat 4493.885 kb on - strandat 4493.935 kb on - strandat 4493.935 kb on - strandat 4493.935 kb on - strandat 4494.021 kb on + strandat 4494.022 kb on - strandat 4494.022 kb on - strandat 4494.023 kb on + strandat 4494.023 kb on + strandat 4494.023 kb on + strandat 4494.024 kb on - strandat 4494.044 kb on - strandat 4494.061 kb on + strandat 4494.061 kb on + strandat 4494.064 kb on + strandat 4494.065 kb on - strandat 4494.077 kb on - strandat 4494.077 kb on - strandat 4494.080 kb on + strandat 4494.080 kb on + strandat 4494.081 kb on - strandat 4494.209 kb on - strand, within ECD_04217at 4494.406 kb on + strand, within ECD_04217at 4494.432 kb on + strand, within ECD_04217at 4494.552 kb on + strand, within ECD_04217at 4494.713 kb on + strand, within ECD_04217at 4494.714 kb on - strand, within ECD_04217at 4494.744 kb on + strand, within ECD_04217at 4494.744 kb on + strand, within ECD_04217at 4494.814 kb on + strand, within ECD_04217at 4494.814 kb on + strand, within ECD_04217at 4494.814 kb on + strand, within ECD_04217at 4494.815 kb on - strand, within ECD_04217at 4494.903 kb on + strandat 4494.904 kb on - strandat 4494.904 kb on - strandat 4494.921 kb on + strandat 4494.982 kb on + strandat 4495.026 kb on + strandat 4495.144 kb on - strand, within ECD_04218at 4495.210 kb on - strand, within ECD_04218at 4495.274 kb on - strand, within ECD_04218at 4495.378 kb on + strand, within ECD_04218at 4495.379 kb on - strand, within ECD_04218at 4495.434 kb on + strand, within ECD_04218at 4495.434 kb on + strand, within ECD_04218at 4495.435 kb on - strand, within ECD_04218at 4495.507 kb on + strand, within ECD_04218at 4495.519 kb on + strand, within ECD_04218at 4495.660 kb on + strand, within ECD_04218at 4495.751 kb on + strand, within ECD_04218at 4495.752 kb on - strand, within ECD_04218at 4495.890 kb on + strandat 4495.907 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
remove
4,493,169 + ECD_04216 0.80 +0.4
4,493,334 + ECD_04216 0.85 -1.0
4,493,336 + ECD_04216 0.85 +0.3
4,493,502 - ECD_04216 0.89 +0.1
4,493,525 + ECD_04216 0.90 -0.9
4,493,525 + ECD_04216 0.90 +0.2
4,493,525 + ECD_04216 0.90 +0.1
4,493,589 - -0.2
4,493,620 + -1.1
4,493,757 + +0.5
4,493,758 - -0.2
4,493,758 - +0.1
4,493,825 + +0.8
4,493,826 - +1.2
4,493,829 + +0.1
4,493,868 + +0.9
4,493,882 - +0.1
4,493,884 + +0.1
4,493,885 - +0.3
4,493,935 - +0.7
4,493,935 - +2.0
4,493,935 - +0.0
4,494,021 + +1.1
4,494,022 - +0.0
4,494,022 - +0.2
4,494,023 + -0.9
4,494,023 + +0.8
4,494,023 + +0.1
4,494,024 - +0.4
4,494,044 - +0.7
4,494,061 + -0.1
4,494,061 + -0.4
4,494,064 + +0.6
4,494,065 - +0.5
4,494,077 - +0.2
4,494,077 - +0.1
4,494,080 + +0.0
4,494,080 + +0.3
4,494,081 - -0.5
4,494,209 - ECD_04217 0.16 +0.1
4,494,406 + ECD_04217 0.37 -0.5
4,494,432 + ECD_04217 0.40 +2.4
4,494,552 + ECD_04217 0.53 +1.3
4,494,713 + ECD_04217 0.71 +0.9
4,494,714 - ECD_04217 0.71 +0.0
4,494,744 + ECD_04217 0.74 +0.3
4,494,744 + ECD_04217 0.74 +0.6
4,494,814 + ECD_04217 0.82 +0.3
4,494,814 + ECD_04217 0.82 +0.5
4,494,814 + ECD_04217 0.82 -0.4
4,494,815 - ECD_04217 0.82 -0.4
4,494,903 + +0.3
4,494,904 - -1.2
4,494,904 - +0.6
4,494,921 + +1.0
4,494,982 + -0.1
4,495,026 + +0.7
4,495,144 - ECD_04218 0.12 +0.6
4,495,210 - ECD_04218 0.19 +0.8
4,495,274 - ECD_04218 0.26 -1.2
4,495,378 + ECD_04218 0.37 +0.8
4,495,379 - ECD_04218 0.37 -0.1
4,495,434 + ECD_04218 0.43 -1.1
4,495,434 + ECD_04218 0.43 +0.5
4,495,435 - ECD_04218 0.43 -0.4
4,495,507 + ECD_04218 0.50 -0.3
4,495,519 + ECD_04218 0.52 -1.0
4,495,660 + ECD_04218 0.66 -0.2
4,495,751 + ECD_04218 0.76 -0.2
4,495,752 - ECD_04218 0.76 -0.1
4,495,890 + +1.3
4,495,907 - -0.0

Or see this region's nucleotide sequence