Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04090 and ECD_04091 are separated by 205 nucleotides ECD_04091 and ECD_04092 overlap by 4 nucleotides
ECD_04090: ECD_04090 - methionine sulfoxide reductase A, at 4,353,660 to 4,354,298
_04090
ECD_04091: ECD_04091 - translocation and assembly module for autotransporter export, outer membrane subunit, at 4,354,504 to 4,356,237
_04091
ECD_04092: ECD_04092 - translocation and assembly module for autotransporter export, inner membrane subunit, at 4,356,234 to 4,360,013
_04092
Position (kb)
4354
4355
4356
4357 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4353.512 kb on - strand at 4353.512 kb on - strand at 4353.557 kb on + strand at 4353.641 kb on + strand at 4353.641 kb on + strand at 4353.641 kb on + strand at 4353.641 kb on + strand at 4353.662 kb on - strand at 4353.662 kb on - strand at 4353.731 kb on - strand, within ECD_04090 at 4353.757 kb on + strand, within ECD_04090 at 4353.963 kb on + strand, within ECD_04090 at 4353.964 kb on - strand, within ECD_04090 at 4353.976 kb on + strand, within ECD_04090 at 4353.976 kb on + strand, within ECD_04090 at 4353.977 kb on - strand, within ECD_04090 at 4354.008 kb on + strand, within ECD_04090 at 4354.068 kb on - strand, within ECD_04090 at 4354.069 kb on + strand, within ECD_04090 at 4354.070 kb on - strand, within ECD_04090 at 4354.081 kb on + strand, within ECD_04090 at 4354.183 kb on - strand, within ECD_04090 at 4354.284 kb on - strand at 4354.340 kb on + strand at 4354.340 kb on + strand at 4354.366 kb on - strand at 4354.379 kb on - strand at 4354.379 kb on - strand at 4354.385 kb on - strand at 4354.433 kb on + strand at 4354.510 kb on + strand at 4354.511 kb on - strand at 4354.532 kb on + strand at 4354.533 kb on - strand at 4354.580 kb on + strand at 4354.781 kb on + strand, within ECD_04091 at 4354.781 kb on + strand, within ECD_04091 at 4354.838 kb on + strand, within ECD_04091 at 4354.968 kb on + strand, within ECD_04091 at 4354.976 kb on - strand, within ECD_04091 at 4355.051 kb on - strand, within ECD_04091 at 4355.051 kb on - strand, within ECD_04091 at 4355.051 kb on - strand, within ECD_04091 at 4355.052 kb on + strand, within ECD_04091 at 4355.052 kb on + strand, within ECD_04091 at 4355.116 kb on + strand, within ECD_04091 at 4355.116 kb on + strand, within ECD_04091 at 4355.116 kb on + strand, within ECD_04091 at 4355.117 kb on - strand, within ECD_04091 at 4355.117 kb on - strand, within ECD_04091 at 4355.117 kb on - strand, within ECD_04091 at 4355.211 kb on + strand, within ECD_04091 at 4355.212 kb on - strand, within ECD_04091 at 4355.328 kb on + strand, within ECD_04091 at 4355.328 kb on + strand, within ECD_04091 at 4355.383 kb on + strand, within ECD_04091 at 4355.383 kb on + strand, within ECD_04091 at 4355.448 kb on + strand, within ECD_04091 at 4355.482 kb on + strand, within ECD_04091 at 4355.483 kb on - strand, within ECD_04091 at 4355.483 kb on - strand, within ECD_04091 at 4355.485 kb on + strand, within ECD_04091 at 4355.485 kb on + strand, within ECD_04091 at 4355.486 kb on - strand, within ECD_04091 at 4355.486 kb on - strand, within ECD_04091 at 4355.564 kb on - strand, within ECD_04091 at 4355.734 kb on + strand, within ECD_04091 at 4355.735 kb on - strand, within ECD_04091 at 4355.746 kb on + strand, within ECD_04091 at 4355.822 kb on - strand, within ECD_04091 at 4356.204 kb on - strand at 4356.212 kb on - strand at 4356.233 kb on + strand at 4356.234 kb on - strand at 4356.280 kb on + strand at 4356.281 kb on - strand at 4356.341 kb on + strand at 4356.510 kb on - strand at 4356.510 kb on - strand at 4356.512 kb on + strand at 4356.513 kb on - strand at 4356.545 kb on + strand at 4356.546 kb on - strand at 4356.596 kb on + strand at 4356.638 kb on - strand, within ECD_04092 at 4356.927 kb on - strand, within ECD_04092 at 4356.947 kb on + strand, within ECD_04092 at 4357.034 kb on + strand, within ECD_04092 at 4357.035 kb on - strand, within ECD_04092 at 4357.133 kb on + strand, within ECD_04092 at 4357.133 kb on + strand, within ECD_04092 at 4357.133 kb on + strand, within ECD_04092 at 4357.133 kb on + strand, within ECD_04092 at 4357.133 kb on + strand, within ECD_04092 at 4357.134 kb on - strand, within ECD_04092 at 4357.136 kb on + strand, within ECD_04092 at 4357.136 kb on + strand, within ECD_04092 at 4357.136 kb on + strand, within ECD_04092 at 4357.136 kb on + strand, within ECD_04092
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 4,353,512 - +0.0 4,353,512 - -2.2 4,353,557 + +0.5 4,353,641 + -0.6 4,353,641 + +3.2 4,353,641 + +0.2 4,353,641 + +0.1 4,353,662 - -0.1 4,353,662 - -0.0 4,353,731 - ECD_04090 0.11 -0.4 4,353,757 + ECD_04090 0.15 +0.0 4,353,963 + ECD_04090 0.47 -2.5 4,353,964 - ECD_04090 0.48 +0.0 4,353,976 + ECD_04090 0.49 -0.7 4,353,976 + ECD_04090 0.49 -0.3 4,353,977 - ECD_04090 0.50 +0.4 4,354,008 + ECD_04090 0.54 +1.2 4,354,068 - ECD_04090 0.64 -1.3 4,354,069 + ECD_04090 0.64 +0.7 4,354,070 - ECD_04090 0.64 +0.5 4,354,081 + ECD_04090 0.66 -0.3 4,354,183 - ECD_04090 0.82 +0.1 4,354,284 - +0.1 4,354,340 + +1.0 4,354,340 + +0.3 4,354,366 - +0.2 4,354,379 - -0.2 4,354,379 - +0.2 4,354,385 - -0.4 4,354,433 + +0.4 4,354,510 + +0.4 4,354,511 - +0.2 4,354,532 + +0.9 4,354,533 - +0.2 4,354,580 + +0.1 4,354,781 + ECD_04091 0.16 +0.1 4,354,781 + ECD_04091 0.16 +0.1 4,354,838 + ECD_04091 0.19 +0.2 4,354,968 + ECD_04091 0.27 +0.4 4,354,976 - ECD_04091 0.27 -0.6 4,355,051 - ECD_04091 0.32 -0.5 4,355,051 - ECD_04091 0.32 -0.2 4,355,051 - ECD_04091 0.32 +0.0 4,355,052 + ECD_04091 0.32 -0.1 4,355,052 + ECD_04091 0.32 -1.6 4,355,116 + ECD_04091 0.35 -0.3 4,355,116 + ECD_04091 0.35 -1.9 4,355,116 + ECD_04091 0.35 +0.4 4,355,117 - ECD_04091 0.35 +0.7 4,355,117 - ECD_04091 0.35 +0.4 4,355,117 - ECD_04091 0.35 -1.1 4,355,211 + ECD_04091 0.41 +0.9 4,355,212 - ECD_04091 0.41 -1.7 4,355,328 + ECD_04091 0.48 +0.2 4,355,328 + ECD_04091 0.48 -0.9 4,355,383 + ECD_04091 0.51 +0.7 4,355,383 + ECD_04091 0.51 +0.7 4,355,448 + ECD_04091 0.54 -0.4 4,355,482 + ECD_04091 0.56 -0.5 4,355,483 - ECD_04091 0.56 -0.6 4,355,483 - ECD_04091 0.56 -0.1 4,355,485 + ECD_04091 0.57 +2.2 4,355,485 + ECD_04091 0.57 +0.3 4,355,486 - ECD_04091 0.57 -0.2 4,355,486 - ECD_04091 0.57 +0.8 4,355,564 - ECD_04091 0.61 +2.0 4,355,734 + ECD_04091 0.71 +0.3 4,355,735 - ECD_04091 0.71 +0.4 4,355,746 + ECD_04091 0.72 -0.5 4,355,822 - ECD_04091 0.76 +0.2 4,356,204 - +0.4 4,356,212 - +0.1 4,356,233 + -0.1 4,356,234 - +0.5 4,356,280 + -0.7 4,356,281 - -0.2 4,356,341 + +1.1 4,356,510 - +0.5 4,356,510 - -1.6 4,356,512 + +0.2 4,356,513 - +0.7 4,356,545 + -0.1 4,356,546 - +0.3 4,356,596 + -0.7 4,356,638 - ECD_04092 0.11 +0.1 4,356,927 - ECD_04092 0.18 +0.7 4,356,947 + ECD_04092 0.19 -0.1 4,357,034 + ECD_04092 0.21 +0.3 4,357,035 - ECD_04092 0.21 +1.3 4,357,133 + ECD_04092 0.24 +0.4 4,357,133 + ECD_04092 0.24 -0.9 4,357,133 + ECD_04092 0.24 +1.4 4,357,133 + ECD_04092 0.24 -0.1 4,357,133 + ECD_04092 0.24 -0.1 4,357,134 - ECD_04092 0.24 -0.3 4,357,136 + ECD_04092 0.24 +0.3 4,357,136 + ECD_04092 0.24 +0.7 4,357,136 + ECD_04092 0.24 -0.7 4,357,136 + ECD_04092 0.24 +0.7
Or see this region's nucleotide sequence