Strain Fitness in Escherichia coli BL21 around ECD_03980

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03979 and ECD_03980 are separated by 400 nucleotidesECD_03980 and ECD_03981 overlap by 4 nucleotides ECD_03979: ECD_03979 - zinc-ribbon family protein, at 4,233,478 to 4,233,813 _03979 ECD_03980: ECD_03980 - clamp-binding sister replication fork colocalization protein, dynamin-related, at 4,234,214 to 4,236,442 _03980 ECD_03981: ECD_03981 - YjcZ family protein; yhjH motility defect suppressor, at 4,236,439 to 4,237,317 _03981 Position (kb) 4234 4235 4236 4237Strain fitness (log2 ratio) -1 0 1 2 3at 4233.244 kb on - strandat 4233.391 kb on + strandat 4233.473 kb on + strandat 4233.610 kb on - strand, within ECD_03979at 4233.630 kb on + strand, within ECD_03979at 4233.640 kb on - strand, within ECD_03979at 4233.681 kb on + strand, within ECD_03979at 4233.752 kb on + strand, within ECD_03979at 4233.752 kb on + strand, within ECD_03979at 4233.753 kb on - strand, within ECD_03979at 4233.753 kb on - strand, within ECD_03979at 4233.753 kb on - strand, within ECD_03979at 4233.762 kb on + strand, within ECD_03979at 4233.777 kb on - strand, within ECD_03979at 4233.777 kb on - strand, within ECD_03979at 4233.806 kb on - strandat 4233.883 kb on + strandat 4233.884 kb on - strandat 4234.217 kb on + strandat 4234.218 kb on - strandat 4234.264 kb on - strandat 4234.645 kb on + strand, within ECD_03980at 4234.646 kb on - strand, within ECD_03980at 4234.672 kb on - strand, within ECD_03980at 4234.681 kb on + strand, within ECD_03980at 4234.846 kb on + strand, within ECD_03980at 4234.847 kb on - strand, within ECD_03980at 4234.847 kb on - strand, within ECD_03980at 4235.015 kb on + strand, within ECD_03980at 4235.090 kb on + strand, within ECD_03980at 4235.090 kb on + strand, within ECD_03980at 4235.091 kb on - strand, within ECD_03980at 4235.104 kb on + strand, within ECD_03980at 4235.125 kb on + strand, within ECD_03980at 4235.185 kb on + strand, within ECD_03980at 4235.185 kb on + strand, within ECD_03980at 4235.189 kb on - strand, within ECD_03980at 4235.203 kb on - strand, within ECD_03980at 4235.274 kb on + strand, within ECD_03980at 4235.444 kb on + strand, within ECD_03980at 4235.444 kb on + strand, within ECD_03980at 4235.445 kb on - strand, within ECD_03980at 4235.462 kb on + strand, within ECD_03980at 4235.462 kb on + strand, within ECD_03980at 4235.462 kb on + strand, within ECD_03980at 4235.463 kb on - strand, within ECD_03980at 4235.485 kb on + strand, within ECD_03980at 4235.486 kb on - strand, within ECD_03980at 4235.519 kb on + strand, within ECD_03980at 4235.575 kb on + strand, within ECD_03980at 4235.604 kb on + strand, within ECD_03980at 4235.605 kb on - strand, within ECD_03980at 4235.642 kb on - strand, within ECD_03980at 4235.784 kb on + strand, within ECD_03980at 4235.784 kb on + strand, within ECD_03980at 4235.785 kb on - strand, within ECD_03980at 4235.818 kb on + strand, within ECD_03980at 4235.958 kb on + strand, within ECD_03980at 4235.958 kb on + strand, within ECD_03980at 4235.959 kb on - strand, within ECD_03980at 4235.959 kb on - strand, within ECD_03980at 4236.039 kb on + strand, within ECD_03980at 4236.128 kb on + strand, within ECD_03980at 4236.128 kb on + strand, within ECD_03980at 4236.129 kb on - strand, within ECD_03980at 4236.129 kb on - strand, within ECD_03980at 4236.151 kb on - strand, within ECD_03980at 4236.235 kb on + strandat 4236.273 kb on + strandat 4236.273 kb on + strandat 4236.286 kb on - strandat 4236.452 kb on + strandat 4236.626 kb on + strand, within ECD_03981at 4236.796 kb on + strand, within ECD_03981at 4236.796 kb on + strand, within ECD_03981at 4236.796 kb on + strand, within ECD_03981at 4236.796 kb on + strand, within ECD_03981at 4236.797 kb on - strand, within ECD_03981at 4236.855 kb on - strand, within ECD_03981at 4236.913 kb on + strand, within ECD_03981at 4237.069 kb on - strand, within ECD_03981at 4237.096 kb on + strand, within ECD_03981at 4237.096 kb on + strand, within ECD_03981at 4237.097 kb on - strand, within ECD_03981at 4237.099 kb on + strand, within ECD_03981at 4237.099 kb on + strand, within ECD_03981at 4237.099 kb on + strand, within ECD_03981at 4237.100 kb on - strand, within ECD_03981at 4237.100 kb on - strand, within ECD_03981at 4237.100 kb on - strand, within ECD_03981at 4237.100 kb on - strand, within ECD_03981at 4237.158 kb on - strand, within ECD_03981at 4237.189 kb on - strand, within ECD_03981at 4237.328 kb on - strandat 4237.439 kb on + strandat 4237.440 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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4,233,244 - -0.0
4,233,391 + -0.3
4,233,473 + +0.2
4,233,610 - ECD_03979 0.39 -0.8
4,233,630 + ECD_03979 0.45 +0.7
4,233,640 - ECD_03979 0.48 +0.1
4,233,681 + ECD_03979 0.60 +0.4
4,233,752 + ECD_03979 0.82 +0.1
4,233,752 + ECD_03979 0.82 +0.3
4,233,753 - ECD_03979 0.82 +1.3
4,233,753 - ECD_03979 0.82 -0.7
4,233,753 - ECD_03979 0.82 +0.9
4,233,762 + ECD_03979 0.85 +0.0
4,233,777 - ECD_03979 0.89 +0.0
4,233,777 - ECD_03979 0.89 +0.8
4,233,806 - -0.6
4,233,883 + -0.4
4,233,884 - +0.9
4,234,217 + +1.4
4,234,218 - +0.1
4,234,264 - +0.7
4,234,645 + ECD_03980 0.19 -0.2
4,234,646 - ECD_03980 0.19 +0.4
4,234,672 - ECD_03980 0.21 +3.3
4,234,681 + ECD_03980 0.21 -0.3
4,234,846 + ECD_03980 0.28 +0.8
4,234,847 - ECD_03980 0.28 +0.1
4,234,847 - ECD_03980 0.28 -0.8
4,235,015 + ECD_03980 0.36 -0.8
4,235,090 + ECD_03980 0.39 -0.8
4,235,090 + ECD_03980 0.39 +0.5
4,235,091 - ECD_03980 0.39 +0.0
4,235,104 + ECD_03980 0.40 +0.9
4,235,125 + ECD_03980 0.41 +1.1
4,235,185 + ECD_03980 0.44 -0.2
4,235,185 + ECD_03980 0.44 -0.1
4,235,189 - ECD_03980 0.44 -1.2
4,235,203 - ECD_03980 0.44 -1.5
4,235,274 + ECD_03980 0.48 -0.0
4,235,444 + ECD_03980 0.55 -0.9
4,235,444 + ECD_03980 0.55 +1.0
4,235,445 - ECD_03980 0.55 +0.6
4,235,462 + ECD_03980 0.56 +0.6
4,235,462 + ECD_03980 0.56 +0.2
4,235,462 + ECD_03980 0.56 +0.3
4,235,463 - ECD_03980 0.56 +0.8
4,235,485 + ECD_03980 0.57 +0.4
4,235,486 - ECD_03980 0.57 -0.6
4,235,519 + ECD_03980 0.59 -0.9
4,235,575 + ECD_03980 0.61 +0.9
4,235,604 + ECD_03980 0.62 +0.4
4,235,605 - ECD_03980 0.62 +1.8
4,235,642 - ECD_03980 0.64 +1.0
4,235,784 + ECD_03980 0.70 +1.5
4,235,784 + ECD_03980 0.70 -1.6
4,235,785 - ECD_03980 0.70 +0.7
4,235,818 + ECD_03980 0.72 -0.9
4,235,958 + ECD_03980 0.78 +2.3
4,235,958 + ECD_03980 0.78 -0.2
4,235,959 - ECD_03980 0.78 +0.3
4,235,959 - ECD_03980 0.78 +0.9
4,236,039 + ECD_03980 0.82 -0.3
4,236,128 + ECD_03980 0.86 +0.5
4,236,128 + ECD_03980 0.86 -0.2
4,236,129 - ECD_03980 0.86 +0.8
4,236,129 - ECD_03980 0.86 +0.4
4,236,151 - ECD_03980 0.87 -0.9
4,236,235 + -0.1
4,236,273 + -0.3
4,236,273 + +0.6
4,236,286 - +0.5
4,236,452 + +0.5
4,236,626 + ECD_03981 0.21 +1.1
4,236,796 + ECD_03981 0.41 -1.2
4,236,796 + ECD_03981 0.41 -0.2
4,236,796 + ECD_03981 0.41 -1.2
4,236,796 + ECD_03981 0.41 +1.6
4,236,797 - ECD_03981 0.41 +0.2
4,236,855 - ECD_03981 0.47 -0.6
4,236,913 + ECD_03981 0.54 +0.7
4,237,069 - ECD_03981 0.72 -1.3
4,237,096 + ECD_03981 0.75 -0.6
4,237,096 + ECD_03981 0.75 -0.1
4,237,097 - ECD_03981 0.75 -0.1
4,237,099 + ECD_03981 0.75 +1.1
4,237,099 + ECD_03981 0.75 -0.6
4,237,099 + ECD_03981 0.75 +0.2
4,237,100 - ECD_03981 0.75 +0.1
4,237,100 - ECD_03981 0.75 -0.1
4,237,100 - ECD_03981 0.75 -0.3
4,237,100 - ECD_03981 0.75 -0.5
4,237,158 - ECD_03981 0.82 -0.7
4,237,189 - ECD_03981 0.85 -0.7
4,237,328 - +0.7
4,237,439 + -0.1
4,237,440 - -0.3

Or see this region's nucleotide sequence