Strain Fitness in Escherichia coli BL21 around ECD_03932

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03930 and ECD_03931 are separated by 254 nucleotidesECD_03931 and ECD_03932 are separated by 98 nucleotidesECD_03932 and ECD_03933 are separated by 429 nucleotides ECD_03930: ECD_03930 - ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC, at 4,178,458 to 4,181,280 _03930 ECD_03931: ECD_03931 - single-stranded DNA-binding protein, at 4,181,535 to 4,182,071 _03931 ECD_03932: ECD_03932 - putative inner membrane protein, at 4,182,170 to 4,182,451 _03932 ECD_03933: ECD_03933 - putative membrane-anchored cyclic-di-GMP phosphodiesterase, at 4,182,881 to 4,184,467 _03933 Position (kb) 4182 4183Strain fitness (log2 ratio) -1 0 1at 4181.245 kb on - strandat 4181.275 kb on - strandat 4181.350 kb on + strandat 4181.351 kb on - strandat 4181.351 kb on - strandat 4181.378 kb on - strandat 4181.411 kb on + strandat 4181.412 kb on - strandat 4181.457 kb on + strandat 4181.495 kb on + strandat 4181.501 kb on + strandat 4182.094 kb on - strandat 4182.165 kb on - strandat 4182.168 kb on + strandat 4182.169 kb on - strandat 4182.219 kb on - strand, within ECD_03932at 4182.219 kb on - strand, within ECD_03932at 4182.247 kb on + strand, within ECD_03932at 4182.248 kb on - strand, within ECD_03932at 4182.346 kb on - strand, within ECD_03932at 4182.395 kb on + strand, within ECD_03932at 4182.404 kb on - strand, within ECD_03932at 4182.404 kb on - strand, within ECD_03932at 4182.404 kb on - strand, within ECD_03932at 4182.517 kb on - strandat 4182.590 kb on - strandat 4182.590 kb on - strandat 4182.620 kb on + strandat 4182.620 kb on + strandat 4182.621 kb on - strandat 4182.621 kb on - strandat 4182.679 kb on - strandat 4182.790 kb on + strandat 4182.791 kb on - strandat 4182.812 kb on + strandat 4182.812 kb on + strandat 4182.813 kb on - strandat 4182.857 kb on + strandat 4182.907 kb on - strandat 4182.933 kb on + strandat 4183.033 kb on + strandat 4183.033 kb on + strandat 4183.155 kb on - strand, within ECD_03933at 4183.271 kb on - strand, within ECD_03933at 4183.271 kb on - strand, within ECD_03933at 4183.319 kb on + strand, within ECD_03933at 4183.415 kb on - strand, within ECD_03933

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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4,181,245 - -0.3
4,181,275 - -0.7
4,181,350 + -0.2
4,181,351 - +0.5
4,181,351 - +0.4
4,181,378 - +0.3
4,181,411 + -0.2
4,181,412 - +0.3
4,181,457 + -0.3
4,181,495 + -0.7
4,181,501 + -0.8
4,182,094 - +0.8
4,182,165 - -0.3
4,182,168 + -0.3
4,182,169 - -0.5
4,182,219 - ECD_03932 0.17 +0.6
4,182,219 - ECD_03932 0.17 +0.2
4,182,247 + ECD_03932 0.27 +0.9
4,182,248 - ECD_03932 0.28 +1.4
4,182,346 - ECD_03932 0.62 +1.1
4,182,395 + ECD_03932 0.80 -0.6
4,182,404 - ECD_03932 0.83 +0.2
4,182,404 - ECD_03932 0.83 +0.5
4,182,404 - ECD_03932 0.83 +0.3
4,182,517 - -0.9
4,182,590 - -0.6
4,182,590 - -1.2
4,182,620 + +1.4
4,182,620 + +0.8
4,182,621 - -0.3
4,182,621 - +0.6
4,182,679 - +0.5
4,182,790 + +0.4
4,182,791 - -0.2
4,182,812 + -0.2
4,182,812 + -1.5
4,182,813 - +0.6
4,182,857 + -0.3
4,182,907 - -0.2
4,182,933 + +0.9
4,183,033 + +0.2
4,183,033 + -0.6
4,183,155 - ECD_03933 0.17 +0.2
4,183,271 - ECD_03933 0.25 -0.1
4,183,271 - ECD_03933 0.25 +0.2
4,183,319 + ECD_03933 0.28 -0.5
4,183,415 - ECD_03933 0.34 +0.5

Or see this region's nucleotide sequence