Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03930 and ECD_03931 are separated by 254 nucleotides ECD_03931 and ECD_03932 are separated by 98 nucleotides ECD_03932 and ECD_03933 are separated by 429 nucleotides
ECD_03930: ECD_03930 - ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC, at 4,178,458 to 4,181,280
_03930
ECD_03931: ECD_03931 - single-stranded DNA-binding protein, at 4,181,535 to 4,182,071
_03931
ECD_03932: ECD_03932 - putative inner membrane protein, at 4,182,170 to 4,182,451
_03932
ECD_03933: ECD_03933 - putative membrane-anchored cyclic-di-GMP phosphodiesterase, at 4,182,881 to 4,184,467
_03933
Position (kb)
4182
4183 Strain fitness (log2 ratio)
-1
0
1 at 4181.245 kb on - strand at 4181.275 kb on - strand at 4181.350 kb on + strand at 4181.351 kb on - strand at 4181.351 kb on - strand at 4181.378 kb on - strand at 4181.411 kb on + strand at 4181.412 kb on - strand at 4181.457 kb on + strand at 4181.495 kb on + strand at 4181.501 kb on + strand at 4182.094 kb on - strand at 4182.165 kb on - strand at 4182.168 kb on + strand at 4182.169 kb on - strand at 4182.219 kb on - strand, within ECD_03932 at 4182.219 kb on - strand, within ECD_03932 at 4182.247 kb on + strand, within ECD_03932 at 4182.248 kb on - strand, within ECD_03932 at 4182.346 kb on - strand, within ECD_03932 at 4182.395 kb on + strand, within ECD_03932 at 4182.404 kb on - strand, within ECD_03932 at 4182.404 kb on - strand, within ECD_03932 at 4182.404 kb on - strand, within ECD_03932 at 4182.517 kb on - strand at 4182.590 kb on - strand at 4182.590 kb on - strand at 4182.620 kb on + strand at 4182.620 kb on + strand at 4182.621 kb on - strand at 4182.621 kb on - strand at 4182.679 kb on - strand at 4182.790 kb on + strand at 4182.791 kb on - strand at 4182.812 kb on + strand at 4182.812 kb on + strand at 4182.813 kb on - strand at 4182.857 kb on + strand at 4182.907 kb on - strand at 4182.933 kb on + strand at 4183.033 kb on + strand at 4183.033 kb on + strand at 4183.155 kb on - strand, within ECD_03933 at 4183.271 kb on - strand, within ECD_03933 at 4183.271 kb on - strand, within ECD_03933 at 4183.319 kb on + strand, within ECD_03933 at 4183.415 kb on - strand, within ECD_03933
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 4,181,245 - -0.3 4,181,275 - -0.7 4,181,350 + -0.2 4,181,351 - +0.5 4,181,351 - +0.4 4,181,378 - +0.3 4,181,411 + -0.2 4,181,412 - +0.3 4,181,457 + -0.3 4,181,495 + -0.7 4,181,501 + -0.8 4,182,094 - +0.8 4,182,165 - -0.3 4,182,168 + -0.3 4,182,169 - -0.5 4,182,219 - ECD_03932 0.17 +0.6 4,182,219 - ECD_03932 0.17 +0.2 4,182,247 + ECD_03932 0.27 +0.9 4,182,248 - ECD_03932 0.28 +1.4 4,182,346 - ECD_03932 0.62 +1.1 4,182,395 + ECD_03932 0.80 -0.6 4,182,404 - ECD_03932 0.83 +0.2 4,182,404 - ECD_03932 0.83 +0.5 4,182,404 - ECD_03932 0.83 +0.3 4,182,517 - -0.9 4,182,590 - -0.6 4,182,590 - -1.2 4,182,620 + +1.4 4,182,620 + +0.8 4,182,621 - -0.3 4,182,621 - +0.6 4,182,679 - +0.5 4,182,790 + +0.4 4,182,791 - -0.2 4,182,812 + -0.2 4,182,812 + -1.5 4,182,813 - +0.6 4,182,857 + -0.3 4,182,907 - -0.2 4,182,933 + +0.9 4,183,033 + +0.2 4,183,033 + -0.6 4,183,155 - ECD_03933 0.17 +0.2 4,183,271 - ECD_03933 0.25 -0.1 4,183,271 - ECD_03933 0.25 +0.2 4,183,319 + ECD_03933 0.28 -0.5 4,183,415 - ECD_03933 0.34 +0.5
Or see this region's nucleotide sequence