Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03912 and ECD_03913 are separated by 154 nucleotides ECD_03913 and ECD_03914 are separated by 170 nucleotides ECD_03914 and ECD_03915 are separated by 109 nucleotides
ECD_03912: ECD_03912 - p-hydroxybenzoate octaprenyltransferase, at 4,160,388 to 4,161,260
_03912
ECD_03913: ECD_03913 - glycerol-3-phosphate O-acyltransferase, at 4,161,415 to 4,163,838
_03913
ECD_03914: ECD_03914 - diacylglycerol kinase, at 4,164,009 to 4,164,377
_03914
ECD_03915: ECD_03915 - transcriptional repressor of SOS regulon, at 4,164,487 to 4,165,095
_03915
Position (kb) 4161
4162
4163
4164 Strain fitness (log2 ratio) -1
0
1 at 4161.366 kb on - strand at 4161.466 kb on - strand at 4161.466 kb on - strand at 4161.466 kb on - strand at 4161.466 kb on - strand at 4161.466 kb on - strand at 4161.466 kb on - strand at 4161.466 kb on - strand at 4163.963 kb on - strand at 4163.968 kb on + strand at 4163.969 kb on - strand at 4163.988 kb on + strand at 4163.993 kb on + strand at 4163.993 kb on + strand at 4164.017 kb on + strand at 4164.020 kb on + strand at 4164.296 kb on + strand, within ECD_03914 at 4164.407 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 4,161,366 - -0.7 4,161,466 - +0.0 4,161,466 - -0.3 4,161,466 - +0.6 4,161,466 - +0.2 4,161,466 - -0.7 4,161,466 - -1.0 4,161,466 - +1.1 4,163,963 - +0.7 4,163,968 + -0.4 4,163,969 - +0.1 4,163,988 + -0.5 4,163,993 + +0.6 4,163,993 + +0.1 4,164,017 + -0.2 4,164,020 + -0.3 4,164,296 + ECD_03914 0.78 -1.0 4,164,407 + +0.1
Or see this region's nucleotide sequence