Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03897 and ECD_03898 are separated by 498 nucleotides ECD_03898 and ECD_03899 are separated by 114 nucleotides ECD_03899 and ECD_03900 overlap by 4 nucleotides
ECD_03897: ECD_03897 - glucosephosphate isomerase, at 4,141,129 to 4,142,778
_03897
ECD_03898: ECD_03898 - extracellular polysaccharide production threonine-rich protein, at 4,143,277 to 4,143,519
_03898
ECD_03899: ECD_03899 - extracellular polysaccharide production lipoprotein, at 4,143,634 to 4,144,272
_03899
ECD_03900: ECD_03900 - extracellular polysaccharide export OMA protein, at 4,144,269 to 4,145,006
_03900
Position (kb)
4143
4144 Strain fitness (log2 ratio)
-2
-1
0
1 at 4142.294 kb on - strand, within ECD_03897 at 4142.495 kb on - strand, within ECD_03897 at 4142.789 kb on + strand at 4142.790 kb on - strand at 4142.858 kb on - strand at 4142.867 kb on - strand at 4142.883 kb on - strand at 4142.883 kb on - strand at 4142.883 kb on - strand at 4142.886 kb on + strand at 4142.886 kb on + strand at 4142.887 kb on - strand at 4142.887 kb on - strand at 4142.887 kb on - strand at 4142.887 kb on - strand at 4142.887 kb on - strand at 4142.887 kb on - strand at 4142.907 kb on + strand at 4142.908 kb on - strand at 4142.908 kb on - strand at 4143.425 kb on + strand, within ECD_03898 at 4143.426 kb on - strand, within ECD_03898 at 4143.477 kb on + strand, within ECD_03898 at 4143.511 kb on - strand at 4143.520 kb on + strand at 4143.521 kb on - strand at 4143.525 kb on + strand at 4143.525 kb on + strand at 4143.525 kb on + strand at 4143.526 kb on - strand at 4143.526 kb on - strand at 4143.526 kb on - strand at 4143.526 kb on - strand at 4143.526 kb on - strand at 4143.529 kb on + strand at 4143.530 kb on - strand at 4143.571 kb on + strand at 4143.771 kb on + strand, within ECD_03899 at 4143.790 kb on + strand, within ECD_03899 at 4143.790 kb on + strand, within ECD_03899 at 4143.801 kb on + strand, within ECD_03899 at 4144.030 kb on + strand, within ECD_03899 at 4144.032 kb on + strand, within ECD_03899 at 4144.032 kb on + strand, within ECD_03899 at 4144.032 kb on + strand, within ECD_03899 at 4144.041 kb on - strand, within ECD_03899 at 4144.213 kb on + strand at 4144.214 kb on - strand at 4144.274 kb on + strand at 4144.275 kb on - strand at 4144.275 kb on - strand at 4144.397 kb on - strand, within ECD_03900
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 4,142,294 - ECD_03897 0.71 -2.0 4,142,495 - ECD_03897 0.83 -0.6 4,142,789 + +0.2 4,142,790 - -0.6 4,142,858 - -0.4 4,142,867 - +0.1 4,142,883 - -1.5 4,142,883 - -0.7 4,142,883 - +0.9 4,142,886 + +0.3 4,142,886 + -0.1 4,142,887 - +0.0 4,142,887 - +1.5 4,142,887 - -0.0 4,142,887 - +0.3 4,142,887 - +0.1 4,142,887 - +1.1 4,142,907 + -0.6 4,142,908 - +0.5 4,142,908 - +0.3 4,143,425 + ECD_03898 0.61 +0.9 4,143,426 - ECD_03898 0.61 +0.0 4,143,477 + ECD_03898 0.82 +0.7 4,143,511 - -1.4 4,143,520 + +0.0 4,143,521 - -0.1 4,143,525 + +0.0 4,143,525 + +0.1 4,143,525 + -1.8 4,143,526 - -0.0 4,143,526 - -0.3 4,143,526 - -0.3 4,143,526 - -0.9 4,143,526 - -0.7 4,143,529 + +0.5 4,143,530 - +0.5 4,143,571 + -0.6 4,143,771 + ECD_03899 0.21 +0.3 4,143,790 + ECD_03899 0.24 +1.2 4,143,790 + ECD_03899 0.24 +0.7 4,143,801 + ECD_03899 0.26 -0.1 4,144,030 + ECD_03899 0.62 -0.3 4,144,032 + ECD_03899 0.62 -0.5 4,144,032 + ECD_03899 0.62 +0.9 4,144,032 + ECD_03899 0.62 -0.4 4,144,041 - ECD_03899 0.64 +0.5 4,144,213 + -0.3 4,144,214 - +0.0 4,144,274 + +0.3 4,144,275 - +0.8 4,144,275 - -0.4 4,144,397 - ECD_03900 0.17 -0.5
Or see this region's nucleotide sequence