Strain Fitness in Escherichia coli BL21 around ECD_03898

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03897 and ECD_03898 are separated by 498 nucleotidesECD_03898 and ECD_03899 are separated by 114 nucleotidesECD_03899 and ECD_03900 overlap by 4 nucleotides ECD_03897: ECD_03897 - glucosephosphate isomerase, at 4,141,129 to 4,142,778 _03897 ECD_03898: ECD_03898 - extracellular polysaccharide production threonine-rich protein, at 4,143,277 to 4,143,519 _03898 ECD_03899: ECD_03899 - extracellular polysaccharide production lipoprotein, at 4,143,634 to 4,144,272 _03899 ECD_03900: ECD_03900 - extracellular polysaccharide export OMA protein, at 4,144,269 to 4,145,006 _03900 Position (kb) 4143 4144Strain fitness (log2 ratio) -2 -1 0 1at 4142.294 kb on - strand, within ECD_03897at 4142.495 kb on - strand, within ECD_03897at 4142.789 kb on + strandat 4142.790 kb on - strandat 4142.858 kb on - strandat 4142.867 kb on - strandat 4142.883 kb on - strandat 4142.883 kb on - strandat 4142.883 kb on - strandat 4142.886 kb on + strandat 4142.886 kb on + strandat 4142.887 kb on - strandat 4142.887 kb on - strandat 4142.887 kb on - strandat 4142.887 kb on - strandat 4142.887 kb on - strandat 4142.887 kb on - strandat 4142.907 kb on + strandat 4142.908 kb on - strandat 4142.908 kb on - strandat 4143.425 kb on + strand, within ECD_03898at 4143.426 kb on - strand, within ECD_03898at 4143.477 kb on + strand, within ECD_03898at 4143.511 kb on - strandat 4143.520 kb on + strandat 4143.521 kb on - strandat 4143.525 kb on + strandat 4143.525 kb on + strandat 4143.525 kb on + strandat 4143.526 kb on - strandat 4143.526 kb on - strandat 4143.526 kb on - strandat 4143.526 kb on - strandat 4143.526 kb on - strandat 4143.529 kb on + strandat 4143.530 kb on - strandat 4143.571 kb on + strandat 4143.771 kb on + strand, within ECD_03899at 4143.790 kb on + strand, within ECD_03899at 4143.790 kb on + strand, within ECD_03899at 4143.801 kb on + strand, within ECD_03899at 4144.030 kb on + strand, within ECD_03899at 4144.032 kb on + strand, within ECD_03899at 4144.032 kb on + strand, within ECD_03899at 4144.032 kb on + strand, within ECD_03899at 4144.041 kb on - strand, within ECD_03899at 4144.213 kb on + strandat 4144.214 kb on - strandat 4144.274 kb on + strandat 4144.275 kb on - strandat 4144.275 kb on - strandat 4144.397 kb on - strand, within ECD_03900

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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4,142,294 - ECD_03897 0.71 -2.0
4,142,495 - ECD_03897 0.83 -0.6
4,142,789 + +0.2
4,142,790 - -0.6
4,142,858 - -0.4
4,142,867 - +0.1
4,142,883 - -1.5
4,142,883 - -0.7
4,142,883 - +0.9
4,142,886 + +0.3
4,142,886 + -0.1
4,142,887 - +0.0
4,142,887 - +1.5
4,142,887 - -0.0
4,142,887 - +0.3
4,142,887 - +0.1
4,142,887 - +1.1
4,142,907 + -0.6
4,142,908 - +0.5
4,142,908 - +0.3
4,143,425 + ECD_03898 0.61 +0.9
4,143,426 - ECD_03898 0.61 +0.0
4,143,477 + ECD_03898 0.82 +0.7
4,143,511 - -1.4
4,143,520 + +0.0
4,143,521 - -0.1
4,143,525 + +0.0
4,143,525 + +0.1
4,143,525 + -1.8
4,143,526 - -0.0
4,143,526 - -0.3
4,143,526 - -0.3
4,143,526 - -0.9
4,143,526 - -0.7
4,143,529 + +0.5
4,143,530 - +0.5
4,143,571 + -0.6
4,143,771 + ECD_03899 0.21 +0.3
4,143,790 + ECD_03899 0.24 +1.2
4,143,790 + ECD_03899 0.24 +0.7
4,143,801 + ECD_03899 0.26 -0.1
4,144,030 + ECD_03899 0.62 -0.3
4,144,032 + ECD_03899 0.62 -0.5
4,144,032 + ECD_03899 0.62 +0.9
4,144,032 + ECD_03899 0.62 -0.4
4,144,041 - ECD_03899 0.64 +0.5
4,144,213 + -0.3
4,144,214 - +0.0
4,144,274 + +0.3
4,144,275 - +0.8
4,144,275 - -0.4
4,144,397 - ECD_03900 0.17 -0.5

Or see this region's nucleotide sequence