Strain Fitness in Escherichia coli BL21 around ECD_03681

Experiment: NophageControl

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03680 and ECD_03681 are separated by 386 nucleotidesECD_03681 and ECD_03682 are separated by 39 nucleotidesECD_03682 and ECD_03683 overlap by 210 nucleotidesECD_03683 and ECD_03684 are separated by 451 nucleotides ECD_03680: ECD_03680 - hydroxymethylbilane synthase, at 3,880,095 to 3,881,036 _03680 ECD_03681: ECD_03681 - adenylate cyclase, at 3,881,423 to 3,883,969 _03681 ECD_03682: ECD_03682 - iron-dependent inhibitor of iron-sulfur cluster formation; frataxin; iron-binding and oxidizing protein, at 3,884,009 to 3,884,329 _03682 ECD_03683: ECD_03683 - hypothetical protein, at 3,884,120 to 3,884,347 _03683 ECD_03684: ECD_03684 - putative lipoprotein, at 3,884,799 to 3,885,002 _03684 Position (kb) 3881 3882 3883 3884Strain fitness (log2 ratio) -2 -1 0 1 2at 3881.044 kb on - strandat 3881.053 kb on - strandat 3881.113 kb on - strandat 3881.113 kb on - strandat 3881.132 kb on - strandat 3881.179 kb on - strandat 3881.179 kb on - strandat 3881.179 kb on - strandat 3881.209 kb on + strandat 3881.209 kb on + strandat 3881.210 kb on - strandat 3881.217 kb on + strandat 3881.217 kb on + strandat 3881.217 kb on + strandat 3881.217 kb on + strandat 3881.217 kb on + strandat 3881.218 kb on - strandat 3881.218 kb on - strandat 3881.218 kb on - strandat 3881.218 kb on - strandat 3881.221 kb on + strandat 3881.221 kb on + strandat 3881.221 kb on + strandat 3881.222 kb on - strandat 3881.236 kb on + strandat 3881.340 kb on + strandat 3881.417 kb on + strandat 3881.426 kb on + strandat 3881.426 kb on + strandat 3881.432 kb on + strandat 3881.434 kb on + strandat 3882.682 kb on + strand, within ECD_03681at 3882.682 kb on + strand, within ECD_03681at 3882.682 kb on + strand, within ECD_03681at 3882.682 kb on + strand, within ECD_03681at 3882.776 kb on - strand, within ECD_03681at 3882.779 kb on + strand, within ECD_03681at 3882.780 kb on - strand, within ECD_03681at 3882.821 kb on + strand, within ECD_03681at 3882.821 kb on + strand, within ECD_03681at 3882.822 kb on - strand, within ECD_03681at 3882.822 kb on - strand, within ECD_03681at 3882.822 kb on - strand, within ECD_03681at 3882.872 kb on + strand, within ECD_03681at 3882.873 kb on - strand, within ECD_03681at 3882.944 kb on + strand, within ECD_03681at 3882.944 kb on + strand, within ECD_03681at 3882.945 kb on - strand, within ECD_03681at 3882.945 kb on - strand, within ECD_03681at 3882.946 kb on + strand, within ECD_03681at 3882.946 kb on + strand, within ECD_03681at 3882.946 kb on + strand, within ECD_03681at 3882.949 kb on + strand, within ECD_03681at 3883.052 kb on + strand, within ECD_03681at 3883.100 kb on + strand, within ECD_03681at 3883.101 kb on - strand, within ECD_03681at 3883.240 kb on + strand, within ECD_03681at 3883.346 kb on + strand, within ECD_03681at 3883.405 kb on + strand, within ECD_03681at 3883.506 kb on + strand, within ECD_03681at 3883.507 kb on - strand, within ECD_03681at 3883.542 kb on - strand, within ECD_03681at 3883.549 kb on + strand, within ECD_03681at 3883.549 kb on + strand, within ECD_03681at 3883.688 kb on - strand, within ECD_03681at 3883.694 kb on + strand, within ECD_03681at 3883.694 kb on + strand, within ECD_03681at 3883.694 kb on + strand, within ECD_03681at 3883.695 kb on - strand, within ECD_03681at 3883.695 kb on - strand, within ECD_03681at 3883.695 kb on - strand, within ECD_03681at 3883.727 kb on + strandat 3883.727 kb on + strandat 3883.728 kb on - strandat 3883.728 kb on - strandat 3883.728 kb on - strandat 3883.728 kb on - strandat 3883.781 kb on + strandat 3883.782 kb on - strandat 3883.809 kb on - strandat 3883.848 kb on - strandat 3883.950 kb on + strandat 3883.950 kb on + strandat 3883.951 kb on - strandat 3883.951 kb on - strandat 3883.951 kb on - strandat 3884.084 kb on - strand, within ECD_03682at 3884.180 kb on - strandat 3884.207 kb on - strandat 3884.335 kb on + strandat 3884.335 kb on + strandat 3884.362 kb on + strandat 3884.363 kb on - strandat 3884.442 kb on + strandat 3884.442 kb on + strandat 3884.442 kb on + strandat 3884.443 kb on - strandat 3884.443 kb on - strandat 3884.443 kb on - strandat 3884.445 kb on + strandat 3884.445 kb on + strandat 3884.446 kb on - strandat 3884.446 kb on - strandat 3884.446 kb on - strandat 3884.451 kb on + strandat 3884.451 kb on + strandat 3884.452 kb on - strandat 3884.452 kb on - strandat 3884.452 kb on - strandat 3884.452 kb on - strandat 3884.452 kb on - strandat 3884.452 kb on - strandat 3884.453 kb on + strandat 3884.454 kb on - strandat 3884.455 kb on + strandat 3884.456 kb on - strandat 3884.456 kb on - strandat 3884.490 kb on - strandat 3884.520 kb on + strandat 3884.521 kb on - strandat 3884.523 kb on + strandat 3884.523 kb on + strandat 3884.523 kb on + strandat 3884.610 kb on + strandat 3884.611 kb on - strandat 3884.647 kb on - strandat 3884.659 kb on + strandat 3884.659 kb on + strandat 3884.660 kb on - strandat 3884.674 kb on - strandat 3884.682 kb on + strandat 3884.683 kb on - strandat 3884.760 kb on + strandat 3884.760 kb on + strandat 3884.761 kb on - strandat 3884.813 kb on + strandat 3884.813 kb on + strandat 3884.827 kb on + strand, within ECD_03684at 3884.827 kb on + strand, within ECD_03684at 3884.827 kb on + strand, within ECD_03684at 3884.830 kb on + strand, within ECD_03684at 3884.834 kb on + strand, within ECD_03684at 3884.834 kb on + strand, within ECD_03684at 3884.834 kb on + strand, within ECD_03684at 3884.894 kb on + strand, within ECD_03684at 3884.895 kb on - strand, within ECD_03684

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
remove
3,881,044 - +0.9
3,881,053 - -0.7
3,881,113 - +2.3
3,881,113 - -0.1
3,881,132 - +1.2
3,881,179 - +0.1
3,881,179 - +0.4
3,881,179 - +0.5
3,881,209 + +0.6
3,881,209 + -0.9
3,881,210 - +0.6
3,881,217 + +0.7
3,881,217 + +0.1
3,881,217 + -0.1
3,881,217 + +0.3
3,881,217 + -0.2
3,881,218 - -0.2
3,881,218 - -0.0
3,881,218 - +0.1
3,881,218 - +0.5
3,881,221 + +0.7
3,881,221 + -0.2
3,881,221 + +0.2
3,881,222 - -0.8
3,881,236 + -0.5
3,881,340 + -0.3
3,881,417 + -0.9
3,881,426 + -0.7
3,881,426 + -0.1
3,881,432 + -0.7
3,881,434 + -0.7
3,882,682 + ECD_03681 0.49 +0.0
3,882,682 + ECD_03681 0.49 -1.3
3,882,682 + ECD_03681 0.49 +0.0
3,882,682 + ECD_03681 0.49 +0.0
3,882,776 - ECD_03681 0.53 -0.4
3,882,779 + ECD_03681 0.53 -1.0
3,882,780 - ECD_03681 0.53 -1.6
3,882,821 + ECD_03681 0.55 -0.4
3,882,821 + ECD_03681 0.55 -1.5
3,882,822 - ECD_03681 0.55 -0.3
3,882,822 - ECD_03681 0.55 -0.3
3,882,822 - ECD_03681 0.55 -0.4
3,882,872 + ECD_03681 0.57 -1.3
3,882,873 - ECD_03681 0.57 -0.3
3,882,944 + ECD_03681 0.60 -2.2
3,882,944 + ECD_03681 0.60 -1.5
3,882,945 - ECD_03681 0.60 -1.0
3,882,945 - ECD_03681 0.60 -2.0
3,882,946 + ECD_03681 0.60 -1.3
3,882,946 + ECD_03681 0.60 -1.1
3,882,946 + ECD_03681 0.60 +0.7
3,882,949 + ECD_03681 0.60 -0.6
3,883,052 + ECD_03681 0.64 +0.2
3,883,100 + ECD_03681 0.66 +1.1
3,883,101 - ECD_03681 0.66 -1.0
3,883,240 + ECD_03681 0.71 -0.1
3,883,346 + ECD_03681 0.76 +0.5
3,883,405 + ECD_03681 0.78 +0.1
3,883,506 + ECD_03681 0.82 -0.6
3,883,507 - ECD_03681 0.82 -0.3
3,883,542 - ECD_03681 0.83 +1.2
3,883,549 + ECD_03681 0.83 -0.8
3,883,549 + ECD_03681 0.83 +0.9
3,883,688 - ECD_03681 0.89 -0.3
3,883,694 + ECD_03681 0.89 +0.1
3,883,694 + ECD_03681 0.89 -0.3
3,883,694 + ECD_03681 0.89 -0.2
3,883,695 - ECD_03681 0.89 -0.3
3,883,695 - ECD_03681 0.89 +0.1
3,883,695 - ECD_03681 0.89 -0.4
3,883,727 + -0.1
3,883,727 + +2.0
3,883,728 - +0.4
3,883,728 - -0.9
3,883,728 - -0.3
3,883,728 - +0.5
3,883,781 + -2.0
3,883,782 - +0.1
3,883,809 - -0.7
3,883,848 - -0.4
3,883,950 + -0.1
3,883,950 + +0.9
3,883,951 - -0.1
3,883,951 - +1.7
3,883,951 - -0.5
3,884,084 - ECD_03682 0.23 +0.0
3,884,180 - -0.8
3,884,207 - -0.1
3,884,335 + -0.6
3,884,335 + -1.2
3,884,362 + -0.6
3,884,363 - +0.9
3,884,442 + -0.1
3,884,442 + -0.6
3,884,442 + -1.1
3,884,443 - -1.2
3,884,443 - -0.7
3,884,443 - +1.1
3,884,445 + -0.3
3,884,445 + -0.3
3,884,446 - -0.2
3,884,446 - +0.4
3,884,446 - -0.8
3,884,451 + -0.0
3,884,451 + +0.5
3,884,452 - -0.3
3,884,452 - +0.2
3,884,452 - +0.0
3,884,452 - +0.2
3,884,452 - -0.9
3,884,452 - -0.8
3,884,453 + +0.9
3,884,454 - +0.2
3,884,455 + -1.0
3,884,456 - +0.7
3,884,456 - +0.5
3,884,490 - -0.1
3,884,520 + -1.0
3,884,521 - +0.9
3,884,523 + +0.2
3,884,523 + -0.5
3,884,523 + +1.0
3,884,610 + +0.5
3,884,611 - +0.9
3,884,647 - +0.1
3,884,659 + +1.2
3,884,659 + +0.1
3,884,660 - -0.5
3,884,674 - +0.5
3,884,682 + +0.3
3,884,683 - -0.3
3,884,760 + +0.5
3,884,760 + +0.8
3,884,761 - -0.1
3,884,813 + +0.6
3,884,813 + +0.8
3,884,827 + ECD_03684 0.14 +0.4
3,884,827 + ECD_03684 0.14 +0.4
3,884,827 + ECD_03684 0.14 -0.1
3,884,830 + ECD_03684 0.15 +0.6
3,884,834 + ECD_03684 0.17 -1.1
3,884,834 + ECD_03684 0.17 +0.7
3,884,834 + ECD_03684 0.17 +0.2
3,884,894 + ECD_03684 0.47 -0.0
3,884,895 - ECD_03684 0.47 -0.0

Or see this region's nucleotide sequence