Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03656 and ECD_03657 are separated by 46 nucleotides ECD_03657 and ECD_03658 are separated by 133 nucleotides
ECD_03656: ECD_03656 - DNA helicase and single-stranded DNA-dependent ATPase, at 3,850,919 to 3,852,940
_03656
ECD_03657: ECD_03657 - guanosine pentaphosphatase/exopolyphosphatase, at 3,852,987 to 3,854,471
_03657
ECD_03658: ECD_03658 - ATP-dependent RNA helicase, at 3,854,605 to 3,855,870
_03658
Position (kb)
3852
3853
3854
3855 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3852.981 kb on + strand at 3852.982 kb on - strand at 3852.982 kb on - strand at 3852.982 kb on - strand at 3852.982 kb on - strand at 3853.015 kb on + strand at 3853.015 kb on + strand at 3853.015 kb on + strand at 3853.015 kb on + strand at 3853.015 kb on + strand at 3853.016 kb on - strand at 3853.016 kb on - strand at 3853.016 kb on - strand at 3853.016 kb on - strand at 3853.016 kb on - strand at 3853.016 kb on - strand at 3853.119 kb on + strand at 3853.120 kb on - strand at 3853.120 kb on - strand at 3853.326 kb on - strand, within ECD_03657 at 3853.336 kb on + strand, within ECD_03657 at 3853.503 kb on - strand, within ECD_03657 at 3853.511 kb on + strand, within ECD_03657 at 3853.512 kb on - strand, within ECD_03657 at 3853.512 kb on - strand, within ECD_03657 at 3853.526 kb on + strand, within ECD_03657 at 3853.529 kb on + strand, within ECD_03657 at 3853.529 kb on + strand, within ECD_03657 at 3853.566 kb on - strand, within ECD_03657 at 3853.577 kb on + strand, within ECD_03657 at 3853.577 kb on + strand, within ECD_03657 at 3853.578 kb on - strand, within ECD_03657 at 3853.578 kb on - strand, within ECD_03657 at 3853.578 kb on - strand, within ECD_03657 at 3853.578 kb on - strand, within ECD_03657 at 3853.622 kb on + strand, within ECD_03657 at 3853.623 kb on - strand, within ECD_03657 at 3853.683 kb on + strand, within ECD_03657 at 3853.683 kb on + strand, within ECD_03657 at 3853.779 kb on - strand, within ECD_03657 at 3853.867 kb on + strand, within ECD_03657 at 3853.872 kb on + strand, within ECD_03657 at 3853.872 kb on + strand, within ECD_03657 at 3853.873 kb on - strand, within ECD_03657 at 3854.056 kb on - strand, within ECD_03657 at 3854.057 kb on + strand, within ECD_03657 at 3854.058 kb on - strand, within ECD_03657 at 3854.111 kb on - strand, within ECD_03657 at 3854.211 kb on + strand, within ECD_03657 at 3854.212 kb on - strand, within ECD_03657 at 3854.253 kb on - strand, within ECD_03657 at 3854.312 kb on + strand, within ECD_03657 at 3854.313 kb on - strand, within ECD_03657 at 3854.450 kb on - strand at 3854.450 kb on - strand at 3854.471 kb on + strand at 3854.529 kb on - strand at 3854.529 kb on - strand at 3854.529 kb on - strand at 3854.529 kb on - strand at 3854.531 kb on + strand at 3854.531 kb on + strand at 3854.531 kb on + strand at 3854.532 kb on - strand at 3854.532 kb on - strand at 3854.532 kb on - strand at 3854.532 kb on - strand at 3854.532 kb on - strand at 3854.532 kb on - strand at 3854.532 kb on - strand at 3854.537 kb on - strand at 3854.537 kb on - strand at 3854.537 kb on - strand at 3854.537 kb on - strand at 3854.537 kb on - strand at 3854.572 kb on - strand at 3854.603 kb on - strand at 3854.662 kb on - strand at 3854.662 kb on - strand at 3854.749 kb on - strand, within ECD_03658 at 3854.750 kb on + strand, within ECD_03658 at 3854.750 kb on + strand, within ECD_03658 at 3854.750 kb on + strand, within ECD_03658 at 3854.750 kb on + strand, within ECD_03658 at 3854.750 kb on + strand, within ECD_03658 at 3854.750 kb on + strand, within ECD_03658 at 3854.751 kb on - strand, within ECD_03658 at 3854.751 kb on - strand, within ECD_03658 at 3854.751 kb on - strand, within ECD_03658 at 3854.751 kb on - strand, within ECD_03658 at 3854.751 kb on - strand, within ECD_03658 at 3854.751 kb on - strand, within ECD_03658 at 3854.751 kb on - strand, within ECD_03658 at 3854.751 kb on - strand, within ECD_03658 at 3854.751 kb on - strand, within ECD_03658 at 3854.761 kb on - strand, within ECD_03658 at 3854.761 kb on - strand, within ECD_03658 at 3854.780 kb on + strand, within ECD_03658 at 3854.781 kb on - strand, within ECD_03658 at 3854.781 kb on - strand, within ECD_03658 at 3854.781 kb on - strand, within ECD_03658 at 3854.802 kb on + strand, within ECD_03658 at 3854.802 kb on + strand, within ECD_03658 at 3854.802 kb on + strand, within ECD_03658 at 3854.833 kb on - strand, within ECD_03658 at 3854.842 kb on - strand, within ECD_03658 at 3854.852 kb on + strand, within ECD_03658 at 3854.873 kb on - strand, within ECD_03658 at 3854.879 kb on + strand, within ECD_03658 at 3854.880 kb on - strand, within ECD_03658 at 3854.880 kb on - strand, within ECD_03658 at 3854.884 kb on - strand, within ECD_03658 at 3854.908 kb on - strand, within ECD_03658 at 3854.908 kb on - strand, within ECD_03658 at 3855.078 kb on + strand, within ECD_03658 at 3855.079 kb on - strand, within ECD_03658 at 3855.154 kb on - strand, within ECD_03658 at 3855.154 kb on - strand, within ECD_03658 at 3855.178 kb on - strand, within ECD_03658 at 3855.181 kb on - strand, within ECD_03658 at 3855.182 kb on - strand, within ECD_03658 at 3855.216 kb on + strand, within ECD_03658 at 3855.216 kb on + strand, within ECD_03658 at 3855.217 kb on - strand, within ECD_03658 at 3855.218 kb on + strand, within ECD_03658 at 3855.219 kb on - strand, within ECD_03658 at 3855.219 kb on - strand, within ECD_03658 at 3855.342 kb on + strand, within ECD_03658 at 3855.342 kb on + strand, within ECD_03658 at 3855.343 kb on - strand, within ECD_03658 at 3855.343 kb on - strand, within ECD_03658 at 3855.359 kb on + strand, within ECD_03658 at 3855.359 kb on + strand, within ECD_03658 at 3855.360 kb on - strand, within ECD_03658 at 3855.360 kb on - strand, within ECD_03658 at 3855.360 kb on - strand, within ECD_03658 at 3855.360 kb on - strand, within ECD_03658 at 3855.360 kb on - strand, within ECD_03658 at 3855.411 kb on + strand, within ECD_03658 at 3855.411 kb on + strand, within ECD_03658 at 3855.411 kb on + strand, within ECD_03658 at 3855.411 kb on + strand, within ECD_03658 at 3855.411 kb on + strand, within ECD_03658 at 3855.412 kb on - strand, within ECD_03658 at 3855.428 kb on + strand, within ECD_03658 at 3855.428 kb on + strand, within ECD_03658 at 3855.428 kb on + strand, within ECD_03658 at 3855.429 kb on - strand, within ECD_03658 at 3855.429 kb on - strand, within ECD_03658 at 3855.429 kb on - strand, within ECD_03658 at 3855.436 kb on + strand, within ECD_03658 at 3855.437 kb on - strand, within ECD_03658
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 3,852,981 + -0.7 3,852,982 - -0.4 3,852,982 - +0.3 3,852,982 - -0.1 3,852,982 - -1.1 3,853,015 + +0.5 3,853,015 + +0.6 3,853,015 + -0.1 3,853,015 + -0.4 3,853,015 + -0.2 3,853,016 - -0.2 3,853,016 - -0.3 3,853,016 - -0.6 3,853,016 - -0.5 3,853,016 - -0.0 3,853,016 - -0.4 3,853,119 + -1.0 3,853,120 - +0.0 3,853,120 - -0.8 3,853,326 - ECD_03657 0.23 -1.5 3,853,336 + ECD_03657 0.24 +1.5 3,853,503 - ECD_03657 0.35 +0.8 3,853,511 + ECD_03657 0.35 +0.9 3,853,512 - ECD_03657 0.35 +0.9 3,853,512 - ECD_03657 0.35 -0.4 3,853,526 + ECD_03657 0.36 +0.3 3,853,529 + ECD_03657 0.36 -0.1 3,853,529 + ECD_03657 0.36 +0.1 3,853,566 - ECD_03657 0.39 -1.6 3,853,577 + ECD_03657 0.40 +0.5 3,853,577 + ECD_03657 0.40 -2.3 3,853,578 - ECD_03657 0.40 -2.8 3,853,578 - ECD_03657 0.40 -0.4 3,853,578 - ECD_03657 0.40 -0.3 3,853,578 - ECD_03657 0.40 -0.2 3,853,622 + ECD_03657 0.43 +0.3 3,853,623 - ECD_03657 0.43 +1.0 3,853,683 + ECD_03657 0.47 -2.0 3,853,683 + ECD_03657 0.47 -0.1 3,853,779 - ECD_03657 0.53 -0.7 3,853,867 + ECD_03657 0.59 +0.5 3,853,872 + ECD_03657 0.60 -0.6 3,853,872 + ECD_03657 0.60 -0.1 3,853,873 - ECD_03657 0.60 -1.1 3,854,056 - ECD_03657 0.72 -1.0 3,854,057 + ECD_03657 0.72 -0.3 3,854,058 - ECD_03657 0.72 -0.7 3,854,111 - ECD_03657 0.76 -2.3 3,854,211 + ECD_03657 0.82 -0.3 3,854,212 - ECD_03657 0.82 -0.6 3,854,253 - ECD_03657 0.85 -0.6 3,854,312 + ECD_03657 0.89 +0.3 3,854,313 - ECD_03657 0.89 +0.9 3,854,450 - +0.3 3,854,450 - -1.1 3,854,471 + -0.5 3,854,529 - -0.1 3,854,529 - -0.5 3,854,529 - -0.2 3,854,529 - +0.4 3,854,531 + +1.1 3,854,531 + +2.1 3,854,531 + +0.5 3,854,532 - +0.4 3,854,532 - -0.1 3,854,532 - -1.5 3,854,532 - +0.0 3,854,532 - +0.1 3,854,532 - +0.4 3,854,532 - -0.2 3,854,537 - +0.3 3,854,537 - +0.9 3,854,537 - +0.4 3,854,537 - -0.4 3,854,537 - -0.9 3,854,572 - -0.3 3,854,603 - +0.2 3,854,662 - +0.4 3,854,662 - +0.8 3,854,749 - ECD_03658 0.11 -1.0 3,854,750 + ECD_03658 0.11 +0.0 3,854,750 + ECD_03658 0.11 -0.6 3,854,750 + ECD_03658 0.11 +0.7 3,854,750 + ECD_03658 0.11 -0.5 3,854,750 + ECD_03658 0.11 +0.5 3,854,750 + ECD_03658 0.11 -3.1 3,854,751 - ECD_03658 0.12 +0.3 3,854,751 - ECD_03658 0.12 -0.9 3,854,751 - ECD_03658 0.12 -0.4 3,854,751 - ECD_03658 0.12 +0.4 3,854,751 - ECD_03658 0.12 +0.3 3,854,751 - ECD_03658 0.12 +0.0 3,854,751 - ECD_03658 0.12 +0.8 3,854,751 - ECD_03658 0.12 +0.5 3,854,751 - ECD_03658 0.12 -0.4 3,854,761 - ECD_03658 0.12 -0.1 3,854,761 - ECD_03658 0.12 +0.3 3,854,780 + ECD_03658 0.14 +1.0 3,854,781 - ECD_03658 0.14 -0.0 3,854,781 - ECD_03658 0.14 -0.0 3,854,781 - ECD_03658 0.14 -0.9 3,854,802 + ECD_03658 0.16 -0.6 3,854,802 + ECD_03658 0.16 -1.8 3,854,802 + ECD_03658 0.16 -2.1 3,854,833 - ECD_03658 0.18 +0.3 3,854,842 - ECD_03658 0.19 -0.0 3,854,852 + ECD_03658 0.20 +0.5 3,854,873 - ECD_03658 0.21 +0.7 3,854,879 + ECD_03658 0.22 -0.3 3,854,880 - ECD_03658 0.22 -0.8 3,854,880 - ECD_03658 0.22 -0.5 3,854,884 - ECD_03658 0.22 +0.8 3,854,908 - ECD_03658 0.24 -1.0 3,854,908 - ECD_03658 0.24 +0.6 3,855,078 + ECD_03658 0.37 +0.0 3,855,079 - ECD_03658 0.37 -1.3 3,855,154 - ECD_03658 0.43 -0.3 3,855,154 - ECD_03658 0.43 -0.8 3,855,178 - ECD_03658 0.45 +0.3 3,855,181 - ECD_03658 0.45 -0.7 3,855,182 - ECD_03658 0.46 -1.9 3,855,216 + ECD_03658 0.48 -0.6 3,855,216 + ECD_03658 0.48 +1.0 3,855,217 - ECD_03658 0.48 -0.8 3,855,218 + ECD_03658 0.48 +0.4 3,855,219 - ECD_03658 0.48 -0.6 3,855,219 - ECD_03658 0.48 +0.9 3,855,342 + ECD_03658 0.58 -0.8 3,855,342 + ECD_03658 0.58 -0.4 3,855,343 - ECD_03658 0.58 +0.8 3,855,343 - ECD_03658 0.58 -1.1 3,855,359 + ECD_03658 0.60 -2.1 3,855,359 + ECD_03658 0.60 +1.0 3,855,360 - ECD_03658 0.60 +0.1 3,855,360 - ECD_03658 0.60 +0.6 3,855,360 - ECD_03658 0.60 -0.1 3,855,360 - ECD_03658 0.60 +0.5 3,855,360 - ECD_03658 0.60 +0.1 3,855,411 + ECD_03658 0.64 +0.3 3,855,411 + ECD_03658 0.64 +0.5 3,855,411 + ECD_03658 0.64 +0.3 3,855,411 + ECD_03658 0.64 +0.2 3,855,411 + ECD_03658 0.64 -0.3 3,855,412 - ECD_03658 0.64 -0.6 3,855,428 + ECD_03658 0.65 -0.1 3,855,428 + ECD_03658 0.65 +0.3 3,855,428 + ECD_03658 0.65 -0.5 3,855,429 - ECD_03658 0.65 +0.0 3,855,429 - ECD_03658 0.65 +0.7 3,855,429 - ECD_03658 0.65 -0.7 3,855,436 + ECD_03658 0.66 -0.9 3,855,437 - ECD_03658 0.66 +0.8
Or see this region's nucleotide sequence