Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03644 and ECD_03645 are separated by 352 nucleotides ECD_03645 and ECD_03646 are separated by 139 nucleotides
ECD_03644: ECD_03644 - magnesium chelatase family protein and putative transcriptional regulator, at 3,838,689 to 3,840,209
_03644
ECD_03645: ECD_03645 - ilvG operon leader peptide, at 3,840,562 to 3,840,660
_03645
ECD_03646: ECD_03646 - acetolactate synthase II, valine insensitive, large subunit, at 3,840,800 to 3,842,446
_03646
Position (kb)
3840
3841 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3839.652 kb on + strand, within ECD_03644 at 3839.653 kb on - strand, within ECD_03644 at 3839.653 kb on - strand, within ECD_03644 at 3839.653 kb on - strand, within ECD_03644 at 3839.702 kb on + strand, within ECD_03644 at 3839.819 kb on + strand, within ECD_03644 at 3839.820 kb on - strand, within ECD_03644 at 3839.822 kb on + strand, within ECD_03644 at 3839.823 kb on - strand, within ECD_03644 at 3839.823 kb on - strand, within ECD_03644 at 3839.893 kb on - strand, within ECD_03644 at 3839.900 kb on - strand, within ECD_03644 at 3839.907 kb on + strand, within ECD_03644 at 3839.908 kb on - strand, within ECD_03644 at 3839.908 kb on - strand, within ECD_03644 at 3839.912 kb on + strand, within ECD_03644 at 3839.912 kb on + strand, within ECD_03644 at 3839.961 kb on + strand, within ECD_03644 at 3839.961 kb on + strand, within ECD_03644 at 3839.962 kb on - strand, within ECD_03644 at 3839.962 kb on - strand, within ECD_03644 at 3839.962 kb on - strand, within ECD_03644 at 3839.962 kb on - strand, within ECD_03644 at 3840.032 kb on - strand, within ECD_03644 at 3840.131 kb on + strand at 3840.137 kb on + strand at 3840.137 kb on + strand at 3840.138 kb on - strand at 3840.138 kb on - strand at 3840.138 kb on - strand at 3840.138 kb on - strand at 3840.138 kb on - strand at 3840.141 kb on + strand at 3840.141 kb on + strand at 3840.141 kb on + strand at 3840.141 kb on + strand at 3840.142 kb on - strand at 3840.142 kb on - strand at 3840.142 kb on - strand at 3840.142 kb on - strand at 3840.169 kb on - strand at 3840.209 kb on + strand at 3840.210 kb on - strand at 3840.210 kb on - strand at 3840.210 kb on - strand at 3840.210 kb on - strand at 3840.210 kb on - strand at 3840.231 kb on + strand at 3840.232 kb on - strand at 3840.232 kb on - strand at 3840.239 kb on + strand at 3840.240 kb on - strand at 3840.245 kb on - strand at 3840.295 kb on + strand at 3840.370 kb on + strand at 3840.371 kb on - strand at 3840.512 kb on + strand at 3840.513 kb on - strand at 3840.517 kb on + strand at 3840.575 kb on + strand, within ECD_03645 at 3840.575 kb on + strand, within ECD_03645 at 3840.680 kb on + strand at 3840.681 kb on - strand at 3840.795 kb on + strand at 3840.795 kb on + strand at 3840.799 kb on + strand at 3840.799 kb on + strand at 3840.799 kb on + strand at 3840.822 kb on + strand at 3840.823 kb on - strand at 3840.823 kb on - strand at 3840.902 kb on + strand at 3840.902 kb on + strand at 3840.902 kb on + strand at 3840.903 kb on - strand at 3840.903 kb on - strand at 3840.903 kb on - strand at 3840.927 kb on + strand at 3840.928 kb on - strand at 3840.928 kb on - strand at 3840.928 kb on - strand at 3840.969 kb on - strand, within ECD_03646 at 3840.996 kb on + strand, within ECD_03646 at 3840.996 kb on + strand, within ECD_03646 at 3840.996 kb on + strand, within ECD_03646 at 3840.997 kb on - strand, within ECD_03646 at 3840.997 kb on - strand, within ECD_03646 at 3841.001 kb on - strand, within ECD_03646 at 3841.001 kb on - strand, within ECD_03646 at 3841.059 kb on + strand, within ECD_03646 at 3841.059 kb on + strand, within ECD_03646 at 3841.059 kb on + strand, within ECD_03646 at 3841.060 kb on - strand, within ECD_03646 at 3841.163 kb on - strand, within ECD_03646 at 3841.279 kb on + strand, within ECD_03646 at 3841.280 kb on - strand, within ECD_03646 at 3841.288 kb on - strand, within ECD_03646 at 3841.403 kb on + strand, within ECD_03646 at 3841.403 kb on + strand, within ECD_03646 at 3841.403 kb on + strand, within ECD_03646 at 3841.403 kb on + strand, within ECD_03646 at 3841.403 kb on + strand, within ECD_03646 at 3841.404 kb on - strand, within ECD_03646 at 3841.404 kb on - strand, within ECD_03646 at 3841.487 kb on - strand, within ECD_03646 at 3841.526 kb on + strand, within ECD_03646 at 3841.529 kb on + strand, within ECD_03646 at 3841.530 kb on - strand, within ECD_03646
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 3,839,652 + ECD_03644 0.63 -0.6 3,839,653 - ECD_03644 0.63 +0.4 3,839,653 - ECD_03644 0.63 +0.9 3,839,653 - ECD_03644 0.63 +0.1 3,839,702 + ECD_03644 0.67 -0.3 3,839,819 + ECD_03644 0.74 -0.1 3,839,820 - ECD_03644 0.74 +0.2 3,839,822 + ECD_03644 0.74 -1.7 3,839,823 - ECD_03644 0.75 +0.3 3,839,823 - ECD_03644 0.75 +0.1 3,839,893 - ECD_03644 0.79 -0.2 3,839,900 - ECD_03644 0.80 -0.4 3,839,907 + ECD_03644 0.80 +0.5 3,839,908 - ECD_03644 0.80 +0.7 3,839,908 - ECD_03644 0.80 +0.3 3,839,912 + ECD_03644 0.80 -0.1 3,839,912 + ECD_03644 0.80 -0.0 3,839,961 + ECD_03644 0.84 +0.1 3,839,961 + ECD_03644 0.84 +0.6 3,839,962 - ECD_03644 0.84 -0.8 3,839,962 - ECD_03644 0.84 +0.2 3,839,962 - ECD_03644 0.84 -0.3 3,839,962 - ECD_03644 0.84 +0.0 3,840,032 - ECD_03644 0.88 -0.2 3,840,131 + -0.2 3,840,137 + +0.6 3,840,137 + +0.1 3,840,138 - -0.2 3,840,138 - -1.1 3,840,138 - -0.7 3,840,138 - -0.6 3,840,138 - -0.2 3,840,141 + -0.2 3,840,141 + -0.6 3,840,141 + +0.4 3,840,141 + -0.0 3,840,142 - +0.3 3,840,142 - +1.6 3,840,142 - -0.1 3,840,142 - +0.6 3,840,169 - +0.8 3,840,209 + -0.3 3,840,210 - +1.1 3,840,210 - -0.6 3,840,210 - +0.3 3,840,210 - -0.5 3,840,210 - +0.1 3,840,231 + -0.9 3,840,232 - +0.3 3,840,232 - +0.2 3,840,239 + -0.2 3,840,240 - -0.2 3,840,245 - +0.9 3,840,295 + +1.5 3,840,370 + +0.4 3,840,371 - -0.4 3,840,512 + +0.2 3,840,513 - -0.2 3,840,517 + +0.5 3,840,575 + ECD_03645 0.13 -1.3 3,840,575 + ECD_03645 0.13 -1.5 3,840,680 + +0.7 3,840,681 - -0.5 3,840,795 + -0.2 3,840,795 + +0.5 3,840,799 + +0.0 3,840,799 + +0.0 3,840,799 + -0.1 3,840,822 + +0.6 3,840,823 - -2.8 3,840,823 - +0.2 3,840,902 + +1.0 3,840,902 + +0.0 3,840,902 + +0.4 3,840,903 - +0.4 3,840,903 - +0.3 3,840,903 - +0.3 3,840,927 + +0.4 3,840,928 - +1.5 3,840,928 - +0.6 3,840,928 - +1.2 3,840,969 - ECD_03646 0.10 -0.1 3,840,996 + ECD_03646 0.12 +0.5 3,840,996 + ECD_03646 0.12 -1.0 3,840,996 + ECD_03646 0.12 -0.9 3,840,997 - ECD_03646 0.12 -0.6 3,840,997 - ECD_03646 0.12 +0.2 3,841,001 - ECD_03646 0.12 +0.5 3,841,001 - ECD_03646 0.12 +0.3 3,841,059 + ECD_03646 0.16 +0.4 3,841,059 + ECD_03646 0.16 -0.4 3,841,059 + ECD_03646 0.16 +0.3 3,841,060 - ECD_03646 0.16 +0.1 3,841,163 - ECD_03646 0.22 +2.7 3,841,279 + ECD_03646 0.29 +0.1 3,841,280 - ECD_03646 0.29 -1.0 3,841,288 - ECD_03646 0.30 -0.3 3,841,403 + ECD_03646 0.37 -0.4 3,841,403 + ECD_03646 0.37 +0.1 3,841,403 + ECD_03646 0.37 +0.3 3,841,403 + ECD_03646 0.37 +1.0 3,841,403 + ECD_03646 0.37 -0.5 3,841,404 - ECD_03646 0.37 +0.3 3,841,404 - ECD_03646 0.37 -1.3 3,841,487 - ECD_03646 0.42 +0.2 3,841,526 + ECD_03646 0.44 +0.4 3,841,529 + ECD_03646 0.44 +1.1 3,841,530 - ECD_03646 0.44 -1.0
Or see this region's nucleotide sequence