Strain Fitness in Escherichia coli BL21 around ECD_03392

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03391 and ECD_03392 overlap by 4 nucleotidesECD_03392 and ECD_03393 are separated by 10 nucleotidesECD_03393 and ECD_03394 are separated by 9 nucleotides ECD_03391: ECD_03391 - dipeptide/heme ABC transporter ATPase, at 3,564,018 to 3,565,022 _03391 ECD_03392: ECD_03392 - dipeptide/heme ABC transporter ATPase, at 3,565,019 to 3,566,002 _03392 ECD_03393: ECD_03393 - dipeptide/heme ABC transporter permease, at 3,566,013 to 3,566,915 _03393 ECD_03394: ECD_03394 - dipeptide/heme ABC transporter permease, at 3,566,925 to 3,567,944 _03394 Position (kb) 3565 3566 3567Strain fitness (log2 ratio) -2 -1 0 1 2at 3564.084 kb on + strandat 3564.084 kb on + strandat 3564.084 kb on + strandat 3564.084 kb on + strandat 3564.085 kb on - strandat 3564.085 kb on - strandat 3564.085 kb on - strandat 3564.174 kb on + strand, within ECD_03391at 3564.240 kb on + strand, within ECD_03391at 3564.316 kb on + strand, within ECD_03391at 3564.317 kb on - strand, within ECD_03391at 3564.317 kb on - strand, within ECD_03391at 3564.371 kb on + strand, within ECD_03391at 3564.379 kb on + strand, within ECD_03391at 3564.379 kb on + strand, within ECD_03391at 3564.379 kb on + strand, within ECD_03391at 3564.380 kb on - strand, within ECD_03391at 3564.542 kb on + strand, within ECD_03391at 3564.543 kb on - strand, within ECD_03391at 3564.543 kb on - strand, within ECD_03391at 3564.559 kb on + strand, within ECD_03391at 3564.560 kb on - strand, within ECD_03391at 3564.560 kb on - strand, within ECD_03391at 3564.628 kb on - strand, within ECD_03391at 3564.697 kb on + strand, within ECD_03391at 3564.761 kb on + strand, within ECD_03391at 3564.762 kb on - strand, within ECD_03391at 3564.784 kb on + strand, within ECD_03391at 3564.784 kb on + strand, within ECD_03391at 3564.784 kb on + strand, within ECD_03391at 3564.785 kb on - strand, within ECD_03391at 3564.842 kb on + strand, within ECD_03391at 3564.864 kb on + strand, within ECD_03391at 3564.894 kb on - strand, within ECD_03391at 3564.959 kb on - strandat 3565.022 kb on + strandat 3565.022 kb on + strandat 3565.022 kb on + strandat 3565.023 kb on - strandat 3565.170 kb on + strand, within ECD_03392at 3565.171 kb on - strand, within ECD_03392at 3565.255 kb on + strand, within ECD_03392at 3565.255 kb on + strand, within ECD_03392at 3565.257 kb on + strand, within ECD_03392at 3565.257 kb on + strand, within ECD_03392at 3565.320 kb on + strand, within ECD_03392at 3565.320 kb on + strand, within ECD_03392at 3565.320 kb on + strand, within ECD_03392at 3565.320 kb on + strand, within ECD_03392at 3565.321 kb on - strand, within ECD_03392at 3565.321 kb on - strand, within ECD_03392at 3565.321 kb on - strand, within ECD_03392at 3565.321 kb on - strand, within ECD_03392at 3565.321 kb on - strand, within ECD_03392at 3565.337 kb on - strand, within ECD_03392at 3565.337 kb on - strand, within ECD_03392at 3565.372 kb on + strand, within ECD_03392at 3565.373 kb on - strand, within ECD_03392at 3565.373 kb on - strand, within ECD_03392at 3565.376 kb on + strand, within ECD_03392at 3565.407 kb on - strand, within ECD_03392at 3565.407 kb on - strand, within ECD_03392at 3565.418 kb on + strand, within ECD_03392at 3565.418 kb on + strand, within ECD_03392at 3565.655 kb on - strand, within ECD_03392at 3565.686 kb on + strand, within ECD_03392at 3565.686 kb on + strand, within ECD_03392at 3565.686 kb on + strand, within ECD_03392at 3565.687 kb on - strand, within ECD_03392at 3565.771 kb on + strand, within ECD_03392at 3565.771 kb on + strand, within ECD_03392at 3565.772 kb on - strand, within ECD_03392at 3565.913 kb on + strandat 3565.914 kb on - strandat 3565.914 kb on - strandat 3565.982 kb on - strandat 3565.985 kb on + strandat 3565.986 kb on - strandat 3565.991 kb on + strandat 3565.992 kb on - strandat 3565.994 kb on + strandat 3566.014 kb on + strandat 3566.014 kb on + strandat 3566.014 kb on + strandat 3566.015 kb on - strandat 3566.066 kb on + strandat 3566.066 kb on + strandat 3566.291 kb on + strand, within ECD_03393at 3566.291 kb on + strand, within ECD_03393at 3566.389 kb on + strand, within ECD_03393at 3566.390 kb on - strand, within ECD_03393at 3566.514 kb on - strand, within ECD_03393at 3566.543 kb on - strand, within ECD_03393at 3566.573 kb on + strand, within ECD_03393at 3566.574 kb on - strand, within ECD_03393at 3566.592 kb on + strand, within ECD_03393at 3566.592 kb on + strand, within ECD_03393at 3566.592 kb on + strand, within ECD_03393at 3566.629 kb on + strand, within ECD_03393at 3566.629 kb on + strand, within ECD_03393at 3566.630 kb on - strand, within ECD_03393at 3566.630 kb on - strand, within ECD_03393at 3566.630 kb on - strand, within ECD_03393at 3566.630 kb on - strand, within ECD_03393at 3566.659 kb on - strand, within ECD_03393at 3566.659 kb on - strand, within ECD_03393at 3566.752 kb on + strand, within ECD_03393at 3566.752 kb on + strand, within ECD_03393at 3566.753 kb on - strand, within ECD_03393at 3566.753 kb on - strand, within ECD_03393at 3566.753 kb on - strand, within ECD_03393at 3566.753 kb on - strand, within ECD_03393at 3566.753 kb on - strand, within ECD_03393at 3566.753 kb on - strand, within ECD_03393at 3566.753 kb on - strand, within ECD_03393at 3566.753 kb on - strand, within ECD_03393at 3566.803 kb on + strand, within ECD_03393at 3566.842 kb on + strandat 3566.843 kb on - strandat 3566.859 kb on + strandat 3566.927 kb on - strandat 3566.933 kb on + strandat 3566.963 kb on - strandat 3566.993 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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3,564,084 + -0.6
3,564,084 + +0.5
3,564,084 + +0.3
3,564,084 + -0.1
3,564,085 - +0.8
3,564,085 - -0.7
3,564,085 - -0.6
3,564,174 + ECD_03391 0.16 -0.4
3,564,240 + ECD_03391 0.22 -0.8
3,564,316 + ECD_03391 0.30 +1.3
3,564,317 - ECD_03391 0.30 -1.1
3,564,317 - ECD_03391 0.30 +1.1
3,564,371 + ECD_03391 0.35 -0.2
3,564,379 + ECD_03391 0.36 +0.5
3,564,379 + ECD_03391 0.36 -0.5
3,564,379 + ECD_03391 0.36 +1.3
3,564,380 - ECD_03391 0.36 -0.4
3,564,542 + ECD_03391 0.52 +0.5
3,564,543 - ECD_03391 0.52 +0.2
3,564,543 - ECD_03391 0.52 +0.3
3,564,559 + ECD_03391 0.54 -0.1
3,564,560 - ECD_03391 0.54 +0.1
3,564,560 - ECD_03391 0.54 +1.4
3,564,628 - ECD_03391 0.61 +1.2
3,564,697 + ECD_03391 0.68 -0.3
3,564,761 + ECD_03391 0.74 +0.4
3,564,762 - ECD_03391 0.74 -0.2
3,564,784 + ECD_03391 0.76 +0.4
3,564,784 + ECD_03391 0.76 +0.3
3,564,784 + ECD_03391 0.76 +0.2
3,564,785 - ECD_03391 0.76 +0.3
3,564,842 + ECD_03391 0.82 +2.0
3,564,864 + ECD_03391 0.84 -0.1
3,564,894 - ECD_03391 0.87 +0.0
3,564,959 - +0.6
3,565,022 + +0.9
3,565,022 + -0.9
3,565,022 + -0.6
3,565,023 - -0.6
3,565,170 + ECD_03392 0.15 +0.5
3,565,171 - ECD_03392 0.15 +0.3
3,565,255 + ECD_03392 0.24 +1.8
3,565,255 + ECD_03392 0.24 +0.5
3,565,257 + ECD_03392 0.24 +0.9
3,565,257 + ECD_03392 0.24 -1.5
3,565,320 + ECD_03392 0.31 +1.0
3,565,320 + ECD_03392 0.31 -0.4
3,565,320 + ECD_03392 0.31 -1.3
3,565,320 + ECD_03392 0.31 +0.2
3,565,321 - ECD_03392 0.31 -1.5
3,565,321 - ECD_03392 0.31 -0.7
3,565,321 - ECD_03392 0.31 +0.3
3,565,321 - ECD_03392 0.31 +0.9
3,565,321 - ECD_03392 0.31 -0.0
3,565,337 - ECD_03392 0.32 +0.4
3,565,337 - ECD_03392 0.32 -0.1
3,565,372 + ECD_03392 0.36 +1.7
3,565,373 - ECD_03392 0.36 -0.2
3,565,373 - ECD_03392 0.36 +0.5
3,565,376 + ECD_03392 0.36 +0.6
3,565,407 - ECD_03392 0.39 +0.3
3,565,407 - ECD_03392 0.39 +1.3
3,565,418 + ECD_03392 0.41 -0.1
3,565,418 + ECD_03392 0.41 +1.1
3,565,655 - ECD_03392 0.65 +0.2
3,565,686 + ECD_03392 0.68 -0.0
3,565,686 + ECD_03392 0.68 +0.4
3,565,686 + ECD_03392 0.68 -0.0
3,565,687 - ECD_03392 0.68 +0.1
3,565,771 + ECD_03392 0.76 +0.2
3,565,771 + ECD_03392 0.76 -0.1
3,565,772 - ECD_03392 0.77 +0.6
3,565,913 + +0.7
3,565,914 - +0.3
3,565,914 - +0.2
3,565,982 - +0.2
3,565,985 + -1.9
3,565,986 - -0.4
3,565,991 + +0.4
3,565,992 - +0.4
3,565,994 + +0.2
3,566,014 + +0.3
3,566,014 + +0.4
3,566,014 + -0.4
3,566,015 - -0.5
3,566,066 + -0.3
3,566,066 + +0.6
3,566,291 + ECD_03393 0.31 +0.9
3,566,291 + ECD_03393 0.31 -0.1
3,566,389 + ECD_03393 0.42 +1.6
3,566,390 - ECD_03393 0.42 +0.4
3,566,514 - ECD_03393 0.55 -0.1
3,566,543 - ECD_03393 0.59 -0.1
3,566,573 + ECD_03393 0.62 -0.1
3,566,574 - ECD_03393 0.62 +0.0
3,566,592 + ECD_03393 0.64 -0.1
3,566,592 + ECD_03393 0.64 +0.6
3,566,592 + ECD_03393 0.64 +1.7
3,566,629 + ECD_03393 0.68 +1.7
3,566,629 + ECD_03393 0.68 +1.4
3,566,630 - ECD_03393 0.68 -1.6
3,566,630 - ECD_03393 0.68 +1.6
3,566,630 - ECD_03393 0.68 +0.1
3,566,630 - ECD_03393 0.68 +0.4
3,566,659 - ECD_03393 0.72 +0.9
3,566,659 - ECD_03393 0.72 +0.4
3,566,752 + ECD_03393 0.82 +0.4
3,566,752 + ECD_03393 0.82 +0.6
3,566,753 - ECD_03393 0.82 -0.2
3,566,753 - ECD_03393 0.82 -0.4
3,566,753 - ECD_03393 0.82 +0.2
3,566,753 - ECD_03393 0.82 -0.4
3,566,753 - ECD_03393 0.82 +0.4
3,566,753 - ECD_03393 0.82 +0.8
3,566,753 - ECD_03393 0.82 +0.5
3,566,753 - ECD_03393 0.82 -0.1
3,566,803 + ECD_03393 0.87 -0.5
3,566,842 + +0.4
3,566,843 - +0.4
3,566,859 + -0.4
3,566,927 - -0.3
3,566,933 + +0.2
3,566,963 - +0.4
3,566,993 + +0.1

Or see this region's nucleotide sequence