Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03111 and ECD_03112 are separated by 151 nucleotides ECD_03112 and ECD_03113 are separated by 977 nucleotides
ECD_03111: ECD_03111 - targeting factor for csrBC sRNA degradation, at 3,262,548 to 3,264,488
_03111
ECD_03112: ECD_03112 - putative acryloyl-CoA reductase, at 3,264,640 to 3,265,614
_03112
ECD_03113: ECD_03113 - acetyl CoA carboxylase, BCCP subunit, at 3,266,592 to 3,267,062
_03113
Position (kb)
3264
3265
3266 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3263.687 kb on + strand, within ECD_03111 at 3263.687 kb on + strand, within ECD_03111 at 3263.688 kb on - strand, within ECD_03111 at 3263.733 kb on + strand, within ECD_03111 at 3263.733 kb on + strand, within ECD_03111 at 3263.734 kb on - strand, within ECD_03111 at 3263.790 kb on - strand, within ECD_03111 at 3263.822 kb on - strand, within ECD_03111 at 3263.838 kb on - strand, within ECD_03111 at 3263.838 kb on - strand, within ECD_03111 at 3263.923 kb on + strand, within ECD_03111 at 3263.923 kb on + strand, within ECD_03111 at 3263.923 kb on + strand, within ECD_03111 at 3263.923 kb on + strand, within ECD_03111 at 3263.923 kb on + strand, within ECD_03111 at 3263.923 kb on + strand, within ECD_03111 at 3263.923 kb on + strand, within ECD_03111 at 3263.923 kb on + strand, within ECD_03111 at 3263.924 kb on - strand, within ECD_03111 at 3263.924 kb on - strand, within ECD_03111 at 3263.924 kb on - strand, within ECD_03111 at 3263.924 kb on - strand, within ECD_03111 at 3263.924 kb on - strand, within ECD_03111 at 3263.924 kb on - strand, within ECD_03111 at 3263.961 kb on + strand, within ECD_03111 at 3263.962 kb on - strand, within ECD_03111 at 3263.966 kb on + strand, within ECD_03111 at 3264.041 kb on + strand, within ECD_03111 at 3264.041 kb on + strand, within ECD_03111 at 3264.042 kb on - strand, within ECD_03111 at 3264.042 kb on - strand, within ECD_03111 at 3264.100 kb on + strand, within ECD_03111 at 3264.100 kb on + strand, within ECD_03111 at 3264.100 kb on + strand, within ECD_03111 at 3264.101 kb on - strand, within ECD_03111 at 3264.101 kb on - strand, within ECD_03111 at 3264.206 kb on - strand, within ECD_03111 at 3264.206 kb on - strand, within ECD_03111 at 3264.206 kb on - strand, within ECD_03111 at 3264.206 kb on - strand, within ECD_03111 at 3264.209 kb on + strand, within ECD_03111 at 3264.210 kb on - strand, within ECD_03111 at 3264.210 kb on - strand, within ECD_03111 at 3264.210 kb on - strand, within ECD_03111 at 3264.210 kb on - strand, within ECD_03111 at 3264.210 kb on - strand, within ECD_03111 at 3264.227 kb on + strand, within ECD_03111 at 3264.228 kb on - strand, within ECD_03111 at 3264.228 kb on - strand, within ECD_03111 at 3264.228 kb on - strand, within ECD_03111 at 3264.229 kb on + strand, within ECD_03111 at 3264.229 kb on + strand, within ECD_03111 at 3264.230 kb on - strand, within ECD_03111 at 3264.230 kb on - strand, within ECD_03111 at 3264.285 kb on + strand, within ECD_03111 at 3264.285 kb on + strand, within ECD_03111 at 3264.285 kb on + strand, within ECD_03111 at 3264.285 kb on + strand, within ECD_03111 at 3264.285 kb on + strand, within ECD_03111 at 3264.286 kb on - strand, within ECD_03111 at 3264.286 kb on - strand, within ECD_03111 at 3264.306 kb on + strand at 3264.306 kb on + strand at 3264.306 kb on + strand at 3264.306 kb on + strand at 3264.307 kb on - strand at 3264.307 kb on - strand at 3264.307 kb on - strand at 3264.307 kb on - strand at 3264.307 kb on - strand at 3264.307 kb on - strand at 3264.309 kb on + strand at 3264.310 kb on - strand at 3264.374 kb on + strand at 3264.375 kb on - strand at 3264.380 kb on + strand at 3264.380 kb on + strand at 3264.380 kb on + strand at 3264.380 kb on + strand at 3264.380 kb on + strand at 3264.381 kb on - strand at 3264.381 kb on - strand at 3264.382 kb on + strand at 3264.398 kb on - strand at 3264.398 kb on - strand at 3264.455 kb on + strand at 3264.455 kb on + strand at 3264.480 kb on + strand at 3264.498 kb on - strand at 3264.524 kb on - strand at 3264.526 kb on + strand at 3264.527 kb on - strand at 3264.541 kb on - strand at 3264.552 kb on + strand at 3264.591 kb on + strand at 3264.592 kb on - strand at 3264.606 kb on - strand at 3264.639 kb on + strand at 3264.640 kb on - strand at 3264.640 kb on - strand at 3264.640 kb on - strand at 3264.690 kb on - strand at 3264.760 kb on + strand, within ECD_03112 at 3264.760 kb on + strand, within ECD_03112 at 3264.761 kb on - strand, within ECD_03112 at 3264.763 kb on - strand, within ECD_03112 at 3265.026 kb on + strand, within ECD_03112 at 3265.143 kb on + strand, within ECD_03112 at 3265.144 kb on - strand, within ECD_03112 at 3265.144 kb on - strand, within ECD_03112 at 3265.144 kb on - strand, within ECD_03112 at 3265.144 kb on - strand, within ECD_03112 at 3265.186 kb on - strand, within ECD_03112 at 3265.186 kb on - strand, within ECD_03112 at 3265.378 kb on - strand, within ECD_03112 at 3265.413 kb on + strand, within ECD_03112 at 3265.413 kb on + strand, within ECD_03112 at 3265.414 kb on - strand, within ECD_03112 at 3265.510 kb on + strand, within ECD_03112 at 3265.533 kb on - strand at 3265.572 kb on + strand at 3265.573 kb on - strand at 3265.573 kb on - strand at 3265.573 kb on - strand at 3265.576 kb on - strand at 3265.608 kb on + strand at 3265.608 kb on + strand at 3265.613 kb on - strand at 3265.631 kb on - strand at 3265.631 kb on - strand at 3265.631 kb on - strand at 3265.631 kb on - strand at 3265.631 kb on - strand at 3265.634 kb on - strand at 3265.661 kb on + strand at 3265.662 kb on - strand at 3265.728 kb on + strand at 3265.730 kb on + strand at 3265.730 kb on + strand at 3265.730 kb on + strand at 3265.730 kb on + strand at 3265.730 kb on + strand at 3265.730 kb on + strand at 3265.731 kb on - strand at 3265.792 kb on - strand at 3265.792 kb on - strand at 3265.807 kb on + strand at 3265.807 kb on + strand at 3265.808 kb on - strand at 3265.834 kb on + strand at 3265.840 kb on + strand at 3265.840 kb on + strand at 3265.879 kb on - strand at 3265.932 kb on - strand at 3265.950 kb on - strand at 3265.989 kb on - strand at 3266.049 kb on + strand at 3266.050 kb on - strand at 3266.084 kb on + strand at 3266.089 kb on + strand at 3266.089 kb on + strand at 3266.089 kb on + strand at 3266.090 kb on - strand at 3266.090 kb on - strand at 3266.109 kb on + strand at 3266.110 kb on - strand at 3266.110 kb on - strand at 3266.162 kb on + strand at 3266.162 kb on + strand at 3266.162 kb on + strand at 3266.162 kb on + strand at 3266.162 kb on + strand at 3266.162 kb on + strand at 3266.167 kb on + strand at 3266.168 kb on - strand at 3266.169 kb on + strand at 3266.227 kb on - strand at 3266.243 kb on + strand at 3266.247 kb on + strand at 3266.247 kb on + strand at 3266.247 kb on + strand at 3266.248 kb on - strand at 3266.265 kb on + strand at 3266.266 kb on - strand at 3266.278 kb on - strand at 3266.286 kb on + strand at 3266.286 kb on + strand at 3266.286 kb on + strand at 3266.290 kb on + strand at 3266.317 kb on + strand at 3266.503 kb on + strand at 3266.532 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 3,263,687 + ECD_03111 0.59 +0.0 3,263,687 + ECD_03111 0.59 +1.0 3,263,688 - ECD_03111 0.59 -0.0 3,263,733 + ECD_03111 0.61 +0.6 3,263,733 + ECD_03111 0.61 +0.7 3,263,734 - ECD_03111 0.61 +0.2 3,263,790 - ECD_03111 0.64 +0.5 3,263,822 - ECD_03111 0.66 +0.2 3,263,838 - ECD_03111 0.66 +0.9 3,263,838 - ECD_03111 0.66 +0.8 3,263,923 + ECD_03111 0.71 -0.4 3,263,923 + ECD_03111 0.71 -0.8 3,263,923 + ECD_03111 0.71 -0.1 3,263,923 + ECD_03111 0.71 +1.6 3,263,923 + ECD_03111 0.71 +0.0 3,263,923 + ECD_03111 0.71 -0.3 3,263,923 + ECD_03111 0.71 +0.7 3,263,923 + ECD_03111 0.71 -0.3 3,263,924 - ECD_03111 0.71 +0.2 3,263,924 - ECD_03111 0.71 +0.1 3,263,924 - ECD_03111 0.71 -0.7 3,263,924 - ECD_03111 0.71 +0.4 3,263,924 - ECD_03111 0.71 +1.7 3,263,924 - ECD_03111 0.71 +0.2 3,263,961 + ECD_03111 0.73 -0.7 3,263,962 - ECD_03111 0.73 +0.9 3,263,966 + ECD_03111 0.73 -0.2 3,264,041 + ECD_03111 0.77 -0.1 3,264,041 + ECD_03111 0.77 +1.2 3,264,042 - ECD_03111 0.77 +1.3 3,264,042 - ECD_03111 0.77 +0.4 3,264,100 + ECD_03111 0.80 -0.3 3,264,100 + ECD_03111 0.80 +1.2 3,264,100 + ECD_03111 0.80 -0.7 3,264,101 - ECD_03111 0.80 +0.1 3,264,101 - ECD_03111 0.80 -1.0 3,264,206 - ECD_03111 0.85 +1.0 3,264,206 - ECD_03111 0.85 +0.5 3,264,206 - ECD_03111 0.85 +1.1 3,264,206 - ECD_03111 0.85 -0.7 3,264,209 + ECD_03111 0.86 +0.2 3,264,210 - ECD_03111 0.86 +0.9 3,264,210 - ECD_03111 0.86 +1.3 3,264,210 - ECD_03111 0.86 +0.4 3,264,210 - ECD_03111 0.86 +0.1 3,264,210 - ECD_03111 0.86 +0.7 3,264,227 + ECD_03111 0.87 +0.9 3,264,228 - ECD_03111 0.87 +0.2 3,264,228 - ECD_03111 0.87 +0.3 3,264,228 - ECD_03111 0.87 -1.2 3,264,229 + ECD_03111 0.87 +0.6 3,264,229 + ECD_03111 0.87 -0.2 3,264,230 - ECD_03111 0.87 +0.4 3,264,230 - ECD_03111 0.87 +0.7 3,264,285 + ECD_03111 0.89 -0.2 3,264,285 + ECD_03111 0.89 -0.8 3,264,285 + ECD_03111 0.89 +0.6 3,264,285 + ECD_03111 0.89 +0.0 3,264,285 + ECD_03111 0.89 +0.5 3,264,286 - ECD_03111 0.90 -0.1 3,264,286 - ECD_03111 0.90 -0.2 3,264,306 + -0.3 3,264,306 + -0.0 3,264,306 + +0.1 3,264,306 + -0.0 3,264,307 - +0.9 3,264,307 - +0.0 3,264,307 - +0.4 3,264,307 - -0.6 3,264,307 - -0.1 3,264,307 - +1.0 3,264,309 + +0.7 3,264,310 - +0.3 3,264,374 + -0.6 3,264,375 - -0.1 3,264,380 + +0.5 3,264,380 + -0.8 3,264,380 + +0.3 3,264,380 + -0.5 3,264,380 + +0.1 3,264,381 - -0.6 3,264,381 - +0.0 3,264,382 + -0.5 3,264,398 - -0.6 3,264,398 - -1.1 3,264,455 + +0.3 3,264,455 + +0.3 3,264,480 + +1.0 3,264,498 - +0.4 3,264,524 - -0.9 3,264,526 + +0.0 3,264,527 - -0.2 3,264,541 - -1.3 3,264,552 + +0.0 3,264,591 + +0.0 3,264,592 - -2.2 3,264,606 - -1.6 3,264,639 + +0.8 3,264,640 - -1.0 3,264,640 - -0.0 3,264,640 - +0.4 3,264,690 - +0.5 3,264,760 + ECD_03112 0.12 -0.3 3,264,760 + ECD_03112 0.12 +0.6 3,264,761 - ECD_03112 0.12 -0.1 3,264,763 - ECD_03112 0.13 +0.3 3,265,026 + ECD_03112 0.40 +0.5 3,265,143 + ECD_03112 0.52 -0.8 3,265,144 - ECD_03112 0.52 +0.6 3,265,144 - ECD_03112 0.52 +0.1 3,265,144 - ECD_03112 0.52 -0.9 3,265,144 - ECD_03112 0.52 +0.6 3,265,186 - ECD_03112 0.56 +0.1 3,265,186 - ECD_03112 0.56 -0.7 3,265,378 - ECD_03112 0.76 +0.9 3,265,413 + ECD_03112 0.79 +0.5 3,265,413 + ECD_03112 0.79 -0.5 3,265,414 - ECD_03112 0.79 -0.8 3,265,510 + ECD_03112 0.89 -0.4 3,265,533 - +0.8 3,265,572 + +0.2 3,265,573 - +0.7 3,265,573 - +0.4 3,265,573 - +1.1 3,265,576 - +2.0 3,265,608 + +0.1 3,265,608 + -0.4 3,265,613 - -0.6 3,265,631 - +1.1 3,265,631 - +1.4 3,265,631 - +1.1 3,265,631 - +0.0 3,265,631 - +0.8 3,265,634 - +0.5 3,265,661 + -0.0 3,265,662 - -0.3 3,265,728 + +0.7 3,265,730 + -0.3 3,265,730 + -0.2 3,265,730 + +1.5 3,265,730 + +0.3 3,265,730 + -0.4 3,265,730 + +0.1 3,265,731 - -0.3 3,265,792 - -0.0 3,265,792 - +1.4 3,265,807 + -0.8 3,265,807 + +0.2 3,265,808 - -1.0 3,265,834 + +0.7 3,265,840 + -0.1 3,265,840 + +0.5 3,265,879 - +0.5 3,265,932 - +0.3 3,265,950 - +0.2 3,265,989 - +0.2 3,266,049 + +0.9 3,266,050 - -0.7 3,266,084 + -0.2 3,266,089 + +0.6 3,266,089 + +0.6 3,266,089 + +0.0 3,266,090 - -2.9 3,266,090 - -0.1 3,266,109 + +0.5 3,266,110 - +0.1 3,266,110 - -1.0 3,266,162 + -0.1 3,266,162 + -0.5 3,266,162 + -0.1 3,266,162 + +0.1 3,266,162 + +0.6 3,266,162 + +0.4 3,266,167 + -0.1 3,266,168 - +1.4 3,266,169 + -0.4 3,266,227 - +0.2 3,266,243 + -1.7 3,266,247 + +0.5 3,266,247 + +0.4 3,266,247 + +0.2 3,266,248 - -0.3 3,266,265 + -0.1 3,266,266 - +0.0 3,266,278 - +0.9 3,266,286 + +1.0 3,266,286 + -0.5 3,266,286 + +0.3 3,266,290 + +0.8 3,266,317 + +1.3 3,266,503 + +0.5 3,266,532 + -0.2
Or see this region's nucleotide sequence