Strain Fitness in Escherichia coli BL21 around ECD_02933

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02931 and ECD_02932 overlap by 4 nucleotidesECD_02932 and ECD_02933 are separated by 47 nucleotidesECD_02933 and ECD_02934 are separated by 42 nucleotides ECD_02931: ECD_02931 - L-tartrate dehydratase, alpha subunit, at 3,072,545 to 3,073,456 _02931 ECD_02932: ECD_02932 - L-tartrate dehydratase, beta subunit, at 3,073,453 to 3,074,058 _02932 ECD_02933: ECD_02933 - L-tartrate/succinate antiporte, at 3,074,106 to 3,075,569 _02933 ECD_02934: ECD_02934 - tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein, at 3,075,612 to 3,076,625 _02934 Position (kb) 3074 3075 3076Strain fitness (log2 ratio) -2 -1 0 1 2at 3073.239 kb on + strand, within ECD_02931at 3073.240 kb on - strand, within ECD_02931at 3073.314 kb on + strand, within ECD_02931at 3073.314 kb on + strand, within ECD_02931at 3073.314 kb on + strand, within ECD_02931at 3073.314 kb on + strand, within ECD_02931at 3073.314 kb on + strand, within ECD_02931at 3073.314 kb on + strand, within ECD_02931at 3073.314 kb on + strand, within ECD_02931at 3073.314 kb on + strand, within ECD_02931at 3073.314 kb on + strand, within ECD_02931at 3073.315 kb on - strand, within ECD_02931at 3073.315 kb on - strand, within ECD_02931at 3073.315 kb on - strand, within ECD_02931at 3073.315 kb on - strand, within ECD_02931at 3073.315 kb on - strand, within ECD_02931at 3073.318 kb on + strand, within ECD_02931at 3073.318 kb on + strand, within ECD_02931at 3073.500 kb on + strandat 3073.500 kb on + strandat 3073.522 kb on + strand, within ECD_02932at 3073.523 kb on - strand, within ECD_02932at 3073.693 kb on - strand, within ECD_02932at 3073.699 kb on - strand, within ECD_02932at 3073.699 kb on - strand, within ECD_02932at 3073.722 kb on + strand, within ECD_02932at 3073.808 kb on + strand, within ECD_02932at 3073.808 kb on + strand, within ECD_02932at 3073.809 kb on - strand, within ECD_02932at 3073.950 kb on + strand, within ECD_02932at 3073.950 kb on + strand, within ECD_02932at 3073.951 kb on - strand, within ECD_02932at 3074.047 kb on + strandat 3074.056 kb on + strandat 3074.056 kb on + strandat 3074.056 kb on + strandat 3074.099 kb on + strandat 3074.100 kb on - strandat 3074.100 kb on - strandat 3074.133 kb on + strandat 3074.162 kb on + strandat 3074.162 kb on + strandat 3074.201 kb on + strandat 3074.201 kb on + strandat 3074.202 kb on - strandat 3074.202 kb on - strandat 3074.289 kb on - strand, within ECD_02933at 3074.435 kb on + strand, within ECD_02933at 3074.435 kb on + strand, within ECD_02933at 3074.567 kb on - strand, within ECD_02933at 3074.600 kb on + strand, within ECD_02933at 3074.600 kb on + strand, within ECD_02933at 3074.601 kb on - strand, within ECD_02933at 3074.601 kb on - strand, within ECD_02933at 3074.601 kb on - strand, within ECD_02933at 3074.601 kb on - strand, within ECD_02933at 3074.601 kb on - strand, within ECD_02933at 3074.605 kb on - strand, within ECD_02933at 3074.634 kb on + strand, within ECD_02933at 3074.635 kb on - strand, within ECD_02933at 3074.679 kb on + strand, within ECD_02933at 3074.679 kb on + strand, within ECD_02933at 3074.680 kb on - strand, within ECD_02933at 3074.680 kb on - strand, within ECD_02933at 3074.680 kb on - strand, within ECD_02933at 3074.759 kb on - strand, within ECD_02933at 3074.759 kb on - strand, within ECD_02933at 3074.868 kb on + strand, within ECD_02933at 3074.869 kb on - strand, within ECD_02933at 3074.869 kb on - strand, within ECD_02933at 3074.878 kb on - strand, within ECD_02933at 3075.021 kb on + strand, within ECD_02933at 3075.021 kb on + strand, within ECD_02933at 3075.021 kb on + strand, within ECD_02933at 3075.021 kb on + strand, within ECD_02933at 3075.022 kb on - strand, within ECD_02933at 3075.022 kb on - strand, within ECD_02933at 3075.022 kb on - strand, within ECD_02933at 3075.022 kb on - strand, within ECD_02933at 3075.104 kb on + strand, within ECD_02933at 3075.107 kb on + strand, within ECD_02933at 3075.146 kb on + strand, within ECD_02933at 3075.183 kb on - strand, within ECD_02933at 3075.185 kb on + strand, within ECD_02933at 3075.206 kb on - strand, within ECD_02933at 3075.217 kb on + strand, within ECD_02933at 3075.268 kb on - strand, within ECD_02933at 3075.303 kb on + strand, within ECD_02933at 3075.303 kb on + strand, within ECD_02933at 3075.303 kb on + strand, within ECD_02933at 3075.303 kb on + strand, within ECD_02933at 3075.304 kb on - strand, within ECD_02933at 3075.304 kb on - strand, within ECD_02933at 3075.304 kb on - strand, within ECD_02933at 3075.305 kb on + strand, within ECD_02933at 3075.305 kb on + strand, within ECD_02933at 3075.305 kb on + strand, within ECD_02933at 3075.305 kb on + strand, within ECD_02933at 3075.416 kb on + strand, within ECD_02933at 3075.417 kb on - strand, within ECD_02933at 3075.417 kb on - strand, within ECD_02933at 3075.424 kb on - strandat 3075.424 kb on - strandat 3075.448 kb on - strandat 3075.520 kb on + strandat 3075.520 kb on + strandat 3075.541 kb on + strandat 3075.541 kb on + strandat 3075.541 kb on + strandat 3075.567 kb on + strandat 3075.568 kb on - strandat 3075.613 kb on + strandat 3075.624 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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3,073,239 + ECD_02931 0.76 -0.4
3,073,240 - ECD_02931 0.76 +0.9
3,073,314 + ECD_02931 0.84 -0.1
3,073,314 + ECD_02931 0.84 +0.1
3,073,314 + ECD_02931 0.84 +0.2
3,073,314 + ECD_02931 0.84 +0.2
3,073,314 + ECD_02931 0.84 -0.2
3,073,314 + ECD_02931 0.84 -0.5
3,073,314 + ECD_02931 0.84 +1.1
3,073,314 + ECD_02931 0.84 -0.4
3,073,314 + ECD_02931 0.84 -0.3
3,073,315 - ECD_02931 0.84 -2.5
3,073,315 - ECD_02931 0.84 -0.2
3,073,315 - ECD_02931 0.84 +0.1
3,073,315 - ECD_02931 0.84 +1.5
3,073,315 - ECD_02931 0.84 -0.1
3,073,318 + ECD_02931 0.85 +2.6
3,073,318 + ECD_02931 0.85 +1.1
3,073,500 + -0.4
3,073,500 + -0.5
3,073,522 + ECD_02932 0.11 +1.9
3,073,523 - ECD_02932 0.12 +0.8
3,073,693 - ECD_02932 0.40 +0.7
3,073,699 - ECD_02932 0.41 -1.6
3,073,699 - ECD_02932 0.41 +0.8
3,073,722 + ECD_02932 0.44 +0.6
3,073,808 + ECD_02932 0.59 -1.3
3,073,808 + ECD_02932 0.59 +0.1
3,073,809 - ECD_02932 0.59 +0.8
3,073,950 + ECD_02932 0.82 -0.0
3,073,950 + ECD_02932 0.82 -1.0
3,073,951 - ECD_02932 0.82 +0.8
3,074,047 + -0.0
3,074,056 + -0.3
3,074,056 + +0.8
3,074,056 + -0.5
3,074,099 + +0.5
3,074,100 - -0.4
3,074,100 - +0.9
3,074,133 + -0.3
3,074,162 + -1.1
3,074,162 + +0.6
3,074,201 + -1.6
3,074,201 + +0.7
3,074,202 - +0.3
3,074,202 - -1.8
3,074,289 - ECD_02933 0.12 -1.2
3,074,435 + ECD_02933 0.22 +0.2
3,074,435 + ECD_02933 0.22 -0.7
3,074,567 - ECD_02933 0.31 +0.8
3,074,600 + ECD_02933 0.34 +0.2
3,074,600 + ECD_02933 0.34 -0.0
3,074,601 - ECD_02933 0.34 -0.2
3,074,601 - ECD_02933 0.34 +0.4
3,074,601 - ECD_02933 0.34 +2.0
3,074,601 - ECD_02933 0.34 -0.3
3,074,601 - ECD_02933 0.34 -1.0
3,074,605 - ECD_02933 0.34 -1.1
3,074,634 + ECD_02933 0.36 -0.2
3,074,635 - ECD_02933 0.36 -0.3
3,074,679 + ECD_02933 0.39 +0.9
3,074,679 + ECD_02933 0.39 -0.9
3,074,680 - ECD_02933 0.39 +0.0
3,074,680 - ECD_02933 0.39 -0.2
3,074,680 - ECD_02933 0.39 -0.5
3,074,759 - ECD_02933 0.45 -0.4
3,074,759 - ECD_02933 0.45 -0.5
3,074,868 + ECD_02933 0.52 -0.1
3,074,869 - ECD_02933 0.52 -2.2
3,074,869 - ECD_02933 0.52 -0.3
3,074,878 - ECD_02933 0.53 +1.0
3,075,021 + ECD_02933 0.62 +0.1
3,075,021 + ECD_02933 0.62 -0.0
3,075,021 + ECD_02933 0.62 +0.9
3,075,021 + ECD_02933 0.62 +1.0
3,075,022 - ECD_02933 0.63 -0.1
3,075,022 - ECD_02933 0.63 +0.0
3,075,022 - ECD_02933 0.63 +1.7
3,075,022 - ECD_02933 0.63 -0.3
3,075,104 + ECD_02933 0.68 +0.4
3,075,107 + ECD_02933 0.68 +0.2
3,075,146 + ECD_02933 0.71 -0.3
3,075,183 - ECD_02933 0.74 -0.2
3,075,185 + ECD_02933 0.74 -0.6
3,075,206 - ECD_02933 0.75 +0.5
3,075,217 + ECD_02933 0.76 -1.7
3,075,268 - ECD_02933 0.79 +1.2
3,075,303 + ECD_02933 0.82 -0.2
3,075,303 + ECD_02933 0.82 -0.6
3,075,303 + ECD_02933 0.82 +1.5
3,075,303 + ECD_02933 0.82 -0.5
3,075,304 - ECD_02933 0.82 +0.1
3,075,304 - ECD_02933 0.82 -0.1
3,075,304 - ECD_02933 0.82 +1.0
3,075,305 + ECD_02933 0.82 -0.6
3,075,305 + ECD_02933 0.82 -0.6
3,075,305 + ECD_02933 0.82 +0.5
3,075,305 + ECD_02933 0.82 -0.9
3,075,416 + ECD_02933 0.89 -0.4
3,075,417 - ECD_02933 0.90 -0.8
3,075,417 - ECD_02933 0.90 +0.0
3,075,424 - -1.2
3,075,424 - -0.7
3,075,448 - +0.4
3,075,520 + -0.3
3,075,520 + -0.2
3,075,541 + -0.2
3,075,541 + -0.8
3,075,541 + +0.2
3,075,567 + -0.8
3,075,568 - -0.2
3,075,613 + +1.2
3,075,624 + -0.8

Or see this region's nucleotide sequence