Strain Fitness in Escherichia coli BL21 around ECD_02814

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02812 and ECD_04360 are separated by 149 nucleotidesECD_04360 and ECD_02813 are separated by 298 nucleotidesECD_02813 and ECD_02814 are separated by 27 nucleotidesECD_02814 and ECD_02815 are separated by 83 nucleotides ECD_02812: ECD_02812 - hypothetical protein, at 2,944,614 to 2,944,907 _02812 ECD_04360: ECD_04360 - hypothetical protein, at 2,945,057 to 2,945,182 _04360 ECD_02813: ECD_02813 - hypothetical protein, at 2,945,481 to 2,945,636 _02813 ECD_02814: ECD_02814 - hypothetical protein, at 2,945,664 to 2,946,683 _02814 ECD_02815: ECD_02815 - Capsule polysaccharide export inner-membrane protein kpsE, at 2,946,767 to 2,947,903 _02815 Position (kb) 2945 2946 2947Strain fitness (log2 ratio) -1 0 1at 2944.679 kb on + strand, within ECD_02812at 2944.679 kb on + strand, within ECD_02812at 2944.680 kb on - strand, within ECD_02812at 2944.680 kb on - strand, within ECD_02812at 2944.772 kb on - strand, within ECD_02812at 2944.835 kb on + strand, within ECD_02812at 2944.835 kb on + strand, within ECD_02812at 2944.836 kb on - strand, within ECD_02812at 2944.836 kb on - strand, within ECD_02812at 2944.899 kb on + strandat 2944.900 kb on - strandat 2944.900 kb on - strandat 2944.954 kb on - strandat 2944.954 kb on - strandat 2945.876 kb on + strand, within ECD_02814at 2946.314 kb on - strand, within ECD_02814at 2946.407 kb on + strand, within ECD_02814at 2946.408 kb on - strand, within ECD_02814at 2946.439 kb on + strand, within ECD_02814at 2946.439 kb on + strand, within ECD_02814at 2946.440 kb on - strand, within ECD_02814at 2946.470 kb on + strand, within ECD_02814at 2946.650 kb on + strandat 2946.685 kb on + strandat 2946.686 kb on - strandat 2946.686 kb on - strandat 2946.707 kb on + strandat 2946.708 kb on - strandat 2946.882 kb on - strand, within ECD_02815at 2946.889 kb on + strand, within ECD_02815at 2946.908 kb on + strand, within ECD_02815at 2946.909 kb on - strand, within ECD_02815at 2946.909 kb on - strand, within ECD_02815at 2946.909 kb on - strand, within ECD_02815at 2946.911 kb on - strand, within ECD_02815at 2947.034 kb on + strand, within ECD_02815at 2947.121 kb on - strand, within ECD_02815at 2947.166 kb on + strand, within ECD_02815at 2947.178 kb on - strand, within ECD_02815at 2947.199 kb on - strand, within ECD_02815at 2947.258 kb on + strand, within ECD_02815at 2947.466 kb on - strand, within ECD_02815at 2947.520 kb on + strand, within ECD_02815at 2947.521 kb on - strand, within ECD_02815at 2947.521 kb on - strand, within ECD_02815at 2947.521 kb on - strand, within ECD_02815at 2947.559 kb on - strand, within ECD_02815at 2947.633 kb on - strand, within ECD_02815at 2947.639 kb on + strand, within ECD_02815at 2947.674 kb on + strand, within ECD_02815

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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2,944,679 + ECD_02812 0.22 +0.8
2,944,679 + ECD_02812 0.22 -0.1
2,944,680 - ECD_02812 0.22 +0.3
2,944,680 - ECD_02812 0.22 +0.9
2,944,772 - ECD_02812 0.54 -0.2
2,944,835 + ECD_02812 0.75 +1.3
2,944,835 + ECD_02812 0.75 -0.4
2,944,836 - ECD_02812 0.76 -0.4
2,944,836 - ECD_02812 0.76 +0.2
2,944,899 + +0.3
2,944,900 - +0.5
2,944,900 - -0.1
2,944,954 - -1.0
2,944,954 - +0.3
2,945,876 + ECD_02814 0.21 +0.4
2,946,314 - ECD_02814 0.64 -0.6
2,946,407 + ECD_02814 0.73 -0.6
2,946,408 - ECD_02814 0.73 -0.3
2,946,439 + ECD_02814 0.76 -0.8
2,946,439 + ECD_02814 0.76 +0.1
2,946,440 - ECD_02814 0.76 +0.2
2,946,470 + ECD_02814 0.79 -1.2
2,946,650 + +0.4
2,946,685 + +0.0
2,946,686 - -0.7
2,946,686 - -0.1
2,946,707 + +0.2
2,946,708 - -0.0
2,946,882 - ECD_02815 0.10 -0.1
2,946,889 + ECD_02815 0.11 +0.5
2,946,908 + ECD_02815 0.12 -0.4
2,946,909 - ECD_02815 0.12 -0.3
2,946,909 - ECD_02815 0.12 -0.9
2,946,909 - ECD_02815 0.12 +0.3
2,946,911 - ECD_02815 0.13 +0.6
2,947,034 + ECD_02815 0.23 -1.1
2,947,121 - ECD_02815 0.31 -0.5
2,947,166 + ECD_02815 0.35 +0.7
2,947,178 - ECD_02815 0.36 +0.1
2,947,199 - ECD_02815 0.38 -0.7
2,947,258 + ECD_02815 0.43 -0.9
2,947,466 - ECD_02815 0.61 +0.9
2,947,520 + ECD_02815 0.66 +0.3
2,947,521 - ECD_02815 0.66 -1.2
2,947,521 - ECD_02815 0.66 -0.8
2,947,521 - ECD_02815 0.66 -0.2
2,947,559 - ECD_02815 0.70 +0.2
2,947,633 - ECD_02815 0.76 +0.2
2,947,639 + ECD_02815 0.77 +0.2
2,947,674 + ECD_02815 0.80 +1.6

Or see this region's nucleotide sequence