Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02812 and ECD_04360 are separated by 149 nucleotides ECD_04360 and ECD_02813 are separated by 298 nucleotides ECD_02813 and ECD_02814 are separated by 27 nucleotides ECD_02814 and ECD_02815 are separated by 83 nucleotides
ECD_02812: ECD_02812 - hypothetical protein, at 2,944,614 to 2,944,907
_02812
ECD_04360: ECD_04360 - hypothetical protein, at 2,945,057 to 2,945,182
_04360
ECD_02813: ECD_02813 - hypothetical protein, at 2,945,481 to 2,945,636
_02813
ECD_02814: ECD_02814 - hypothetical protein, at 2,945,664 to 2,946,683
_02814
ECD_02815: ECD_02815 - Capsule polysaccharide export inner-membrane protein kpsE, at 2,946,767 to 2,947,903
_02815
Position (kb)
2945
2946
2947 Strain fitness (log2 ratio)
-1
0
1 at 2944.679 kb on + strand, within ECD_02812 at 2944.679 kb on + strand, within ECD_02812 at 2944.680 kb on - strand, within ECD_02812 at 2944.680 kb on - strand, within ECD_02812 at 2944.772 kb on - strand, within ECD_02812 at 2944.835 kb on + strand, within ECD_02812 at 2944.835 kb on + strand, within ECD_02812 at 2944.836 kb on - strand, within ECD_02812 at 2944.836 kb on - strand, within ECD_02812 at 2944.899 kb on + strand at 2944.900 kb on - strand at 2944.900 kb on - strand at 2944.954 kb on - strand at 2944.954 kb on - strand at 2945.876 kb on + strand, within ECD_02814 at 2946.314 kb on - strand, within ECD_02814 at 2946.407 kb on + strand, within ECD_02814 at 2946.408 kb on - strand, within ECD_02814 at 2946.439 kb on + strand, within ECD_02814 at 2946.439 kb on + strand, within ECD_02814 at 2946.440 kb on - strand, within ECD_02814 at 2946.470 kb on + strand, within ECD_02814 at 2946.650 kb on + strand at 2946.685 kb on + strand at 2946.686 kb on - strand at 2946.686 kb on - strand at 2946.707 kb on + strand at 2946.708 kb on - strand at 2946.882 kb on - strand, within ECD_02815 at 2946.889 kb on + strand, within ECD_02815 at 2946.908 kb on + strand, within ECD_02815 at 2946.909 kb on - strand, within ECD_02815 at 2946.909 kb on - strand, within ECD_02815 at 2946.909 kb on - strand, within ECD_02815 at 2946.911 kb on - strand, within ECD_02815 at 2947.034 kb on + strand, within ECD_02815 at 2947.121 kb on - strand, within ECD_02815 at 2947.166 kb on + strand, within ECD_02815 at 2947.178 kb on - strand, within ECD_02815 at 2947.199 kb on - strand, within ECD_02815 at 2947.258 kb on + strand, within ECD_02815 at 2947.466 kb on - strand, within ECD_02815 at 2947.520 kb on + strand, within ECD_02815 at 2947.521 kb on - strand, within ECD_02815 at 2947.521 kb on - strand, within ECD_02815 at 2947.521 kb on - strand, within ECD_02815 at 2947.559 kb on - strand, within ECD_02815 at 2947.633 kb on - strand, within ECD_02815 at 2947.639 kb on + strand, within ECD_02815 at 2947.674 kb on + strand, within ECD_02815
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 2,944,679 + ECD_02812 0.22 +0.8 2,944,679 + ECD_02812 0.22 -0.1 2,944,680 - ECD_02812 0.22 +0.3 2,944,680 - ECD_02812 0.22 +0.9 2,944,772 - ECD_02812 0.54 -0.2 2,944,835 + ECD_02812 0.75 +1.3 2,944,835 + ECD_02812 0.75 -0.4 2,944,836 - ECD_02812 0.76 -0.4 2,944,836 - ECD_02812 0.76 +0.2 2,944,899 + +0.3 2,944,900 - +0.5 2,944,900 - -0.1 2,944,954 - -1.0 2,944,954 - +0.3 2,945,876 + ECD_02814 0.21 +0.4 2,946,314 - ECD_02814 0.64 -0.6 2,946,407 + ECD_02814 0.73 -0.6 2,946,408 - ECD_02814 0.73 -0.3 2,946,439 + ECD_02814 0.76 -0.8 2,946,439 + ECD_02814 0.76 +0.1 2,946,440 - ECD_02814 0.76 +0.2 2,946,470 + ECD_02814 0.79 -1.2 2,946,650 + +0.4 2,946,685 + +0.0 2,946,686 - -0.7 2,946,686 - -0.1 2,946,707 + +0.2 2,946,708 - -0.0 2,946,882 - ECD_02815 0.10 -0.1 2,946,889 + ECD_02815 0.11 +0.5 2,946,908 + ECD_02815 0.12 -0.4 2,946,909 - ECD_02815 0.12 -0.3 2,946,909 - ECD_02815 0.12 -0.9 2,946,909 - ECD_02815 0.12 +0.3 2,946,911 - ECD_02815 0.13 +0.6 2,947,034 + ECD_02815 0.23 -1.1 2,947,121 - ECD_02815 0.31 -0.5 2,947,166 + ECD_02815 0.35 +0.7 2,947,178 - ECD_02815 0.36 +0.1 2,947,199 - ECD_02815 0.38 -0.7 2,947,258 + ECD_02815 0.43 -0.9 2,947,466 - ECD_02815 0.61 +0.9 2,947,520 + ECD_02815 0.66 +0.3 2,947,521 - ECD_02815 0.66 -1.2 2,947,521 - ECD_02815 0.66 -0.8 2,947,521 - ECD_02815 0.66 -0.2 2,947,559 - ECD_02815 0.70 +0.2 2,947,633 - ECD_02815 0.76 +0.2 2,947,639 + ECD_02815 0.77 +0.2 2,947,674 + ECD_02815 0.80 +1.6
Or see this region's nucleotide sequence