Strain Fitness in Escherichia coli BL21 around ECD_02211

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02209 and ECD_02210 overlap by 4 nucleotidesECD_02210 and ECD_02211 are separated by 2 nucleotidesECD_02211 and ECD_02212 are separated by 93 nucleotidesECD_02212 and ECD_02213 are separated by 15 nucleotides ECD_02209: ECD_02209 - NADH:ubiquinone oxidoreductase, chain F, at 2,287,470 to 2,288,807 _02209 ECD_02210: ECD_02210 - NADH:ubiquinone oxidoreductase, chain E, at 2,288,804 to 2,289,304 _02210 ECD_02211: ECD_02211 - NADH:ubiquinone oxidoreductase, fused CD subunit, at 2,289,307 to 2,291,109 _02211 ECD_02212: ECD_02212 - NADH:ubiquinone oxidoreductase, chain B, at 2,291,203 to 2,291,865 _02212 ECD_02213: ECD_02213 - NADH:ubiquinone oxidoreductase, membrane subunit A, at 2,291,881 to 2,292,324 _02213 Position (kb) 2289 2290 2291 2292Strain fitness (log2 ratio) -2 -1 0 1 2at 2288.399 kb on + strand, within ECD_02209at 2288.399 kb on + strand, within ECD_02209at 2288.402 kb on - strand, within ECD_02209at 2288.402 kb on - strand, within ECD_02209at 2288.420 kb on + strand, within ECD_02209at 2288.421 kb on - strand, within ECD_02209at 2288.422 kb on + strand, within ECD_02209at 2288.423 kb on - strand, within ECD_02209at 2288.423 kb on - strand, within ECD_02209at 2288.431 kb on + strand, within ECD_02209at 2288.512 kb on + strand, within ECD_02209at 2288.512 kb on + strand, within ECD_02209at 2288.541 kb on - strand, within ECD_02209at 2288.691 kb on - strandat 2288.809 kb on + strandat 2288.810 kb on - strandat 2288.811 kb on + strandat 2288.926 kb on + strand, within ECD_02210at 2288.927 kb on - strand, within ECD_02210at 2289.011 kb on - strand, within ECD_02210at 2289.078 kb on + strand, within ECD_02210at 2289.079 kb on - strand, within ECD_02210at 2289.079 kb on - strand, within ECD_02210at 2289.116 kb on - strand, within ECD_02210at 2289.220 kb on - strand, within ECD_02210at 2289.304 kb on + strandat 2289.305 kb on - strandat 2289.305 kb on - strandat 2289.305 kb on - strandat 2289.328 kb on - strandat 2289.339 kb on + strandat 2289.470 kb on + strandat 2289.474 kb on - strandat 2289.474 kb on - strandat 2289.474 kb on - strandat 2289.577 kb on - strand, within ECD_02211at 2289.577 kb on - strand, within ECD_02211at 2289.720 kb on - strand, within ECD_02211at 2289.780 kb on - strand, within ECD_02211at 2290.071 kb on - strand, within ECD_02211at 2290.089 kb on + strand, within ECD_02211at 2290.132 kb on - strand, within ECD_02211at 2290.132 kb on - strand, within ECD_02211at 2290.144 kb on - strand, within ECD_02211at 2290.145 kb on + strand, within ECD_02211at 2290.250 kb on + strand, within ECD_02211at 2290.298 kb on + strand, within ECD_02211at 2290.298 kb on + strand, within ECD_02211at 2290.298 kb on + strand, within ECD_02211at 2290.299 kb on - strand, within ECD_02211at 2290.299 kb on - strand, within ECD_02211at 2290.307 kb on + strand, within ECD_02211at 2290.308 kb on - strand, within ECD_02211at 2290.669 kb on - strand, within ECD_02211at 2290.879 kb on + strand, within ECD_02211at 2291.097 kb on + strandat 2291.142 kb on - strandat 2291.162 kb on - strandat 2291.229 kb on + strandat 2291.230 kb on - strandat 2291.230 kb on - strandat 2291.373 kb on - strand, within ECD_02212at 2291.403 kb on + strand, within ECD_02212at 2291.405 kb on + strand, within ECD_02212at 2291.405 kb on + strand, within ECD_02212at 2291.406 kb on - strand, within ECD_02212at 2291.406 kb on - strand, within ECD_02212at 2291.406 kb on - strand, within ECD_02212at 2291.406 kb on - strand, within ECD_02212at 2291.455 kb on - strand, within ECD_02212at 2291.460 kb on - strand, within ECD_02212at 2291.460 kb on - strand, within ECD_02212at 2291.460 kb on - strand, within ECD_02212at 2291.460 kb on - strand, within ECD_02212at 2291.460 kb on - strand, within ECD_02212at 2291.463 kb on + strand, within ECD_02212at 2291.463 kb on + strand, within ECD_02212at 2291.525 kb on + strand, within ECD_02212at 2291.526 kb on - strand, within ECD_02212at 2291.526 kb on - strand, within ECD_02212at 2291.612 kb on - strand, within ECD_02212at 2291.695 kb on - strand, within ECD_02212at 2291.727 kb on + strand, within ECD_02212at 2291.856 kb on + strandat 2291.856 kb on + strandat 2291.856 kb on + strandat 2291.857 kb on - strandat 2291.857 kb on - strandat 2291.857 kb on - strandat 2291.858 kb on + strandat 2291.922 kb on + strandat 2291.979 kb on - strand, within ECD_02213

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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2,288,399 + ECD_02209 0.69 -0.6
2,288,399 + ECD_02209 0.69 -0.8
2,288,402 - ECD_02209 0.70 -1.6
2,288,402 - ECD_02209 0.70 -0.8
2,288,420 + ECD_02209 0.71 +1.1
2,288,421 - ECD_02209 0.71 -1.0
2,288,422 + ECD_02209 0.71 -0.7
2,288,423 - ECD_02209 0.71 +1.4
2,288,423 - ECD_02209 0.71 -0.9
2,288,431 + ECD_02209 0.72 -0.8
2,288,512 + ECD_02209 0.78 +0.3
2,288,512 + ECD_02209 0.78 +0.3
2,288,541 - ECD_02209 0.80 -0.3
2,288,691 - -1.0
2,288,809 + -0.6
2,288,810 - -0.4
2,288,811 + +0.2
2,288,926 + ECD_02210 0.24 +0.4
2,288,927 - ECD_02210 0.25 +0.4
2,289,011 - ECD_02210 0.41 -2.3
2,289,078 + ECD_02210 0.55 +0.2
2,289,079 - ECD_02210 0.55 -0.1
2,289,079 - ECD_02210 0.55 -0.1
2,289,116 - ECD_02210 0.62 +0.1
2,289,220 - ECD_02210 0.83 -1.1
2,289,304 + +0.4
2,289,305 - +0.6
2,289,305 - -0.5
2,289,305 - -1.7
2,289,328 - -0.1
2,289,339 + -0.5
2,289,470 + -0.6
2,289,474 - -1.1
2,289,474 - -0.1
2,289,474 - +0.6
2,289,577 - ECD_02211 0.15 -1.7
2,289,577 - ECD_02211 0.15 -0.1
2,289,720 - ECD_02211 0.23 -0.2
2,289,780 - ECD_02211 0.26 -0.7
2,290,071 - ECD_02211 0.42 -0.8
2,290,089 + ECD_02211 0.43 -0.2
2,290,132 - ECD_02211 0.46 -1.8
2,290,132 - ECD_02211 0.46 +0.2
2,290,144 - ECD_02211 0.46 -0.8
2,290,145 + ECD_02211 0.46 +0.9
2,290,250 + ECD_02211 0.52 -1.7
2,290,298 + ECD_02211 0.55 +0.7
2,290,298 + ECD_02211 0.55 +0.1
2,290,298 + ECD_02211 0.55 +2.5
2,290,299 - ECD_02211 0.55 -0.4
2,290,299 - ECD_02211 0.55 -0.9
2,290,307 + ECD_02211 0.55 +1.9
2,290,308 - ECD_02211 0.56 -1.9
2,290,669 - ECD_02211 0.76 -0.1
2,290,879 + ECD_02211 0.87 -0.4
2,291,097 + -0.5
2,291,142 - -0.4
2,291,162 - -1.6
2,291,229 + -0.1
2,291,230 - -0.5
2,291,230 - -0.2
2,291,373 - ECD_02212 0.26 +0.4
2,291,403 + ECD_02212 0.30 -0.6
2,291,405 + ECD_02212 0.30 -0.9
2,291,405 + ECD_02212 0.30 -0.9
2,291,406 - ECD_02212 0.31 -0.4
2,291,406 - ECD_02212 0.31 -1.7
2,291,406 - ECD_02212 0.31 -0.9
2,291,406 - ECD_02212 0.31 -1.4
2,291,455 - ECD_02212 0.38 -0.6
2,291,460 - ECD_02212 0.39 +0.4
2,291,460 - ECD_02212 0.39 -0.4
2,291,460 - ECD_02212 0.39 -0.8
2,291,460 - ECD_02212 0.39 -0.2
2,291,460 - ECD_02212 0.39 -1.9
2,291,463 + ECD_02212 0.39 +0.1
2,291,463 + ECD_02212 0.39 +0.2
2,291,525 + ECD_02212 0.49 -0.4
2,291,526 - ECD_02212 0.49 +0.9
2,291,526 - ECD_02212 0.49 -1.0
2,291,612 - ECD_02212 0.62 +1.0
2,291,695 - ECD_02212 0.74 +0.6
2,291,727 + ECD_02212 0.79 +0.9
2,291,856 + +0.4
2,291,856 + -1.7
2,291,856 + -0.2
2,291,857 - -0.4
2,291,857 - -0.2
2,291,857 - -2.0
2,291,858 + +0.3
2,291,922 + +0.6
2,291,979 - ECD_02213 0.22 +0.0

Or see this region's nucleotide sequence