Strain Fitness in Escherichia coli BL21 around ECD_02070

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02069 and ECD_02070 are separated by 237 nucleotidesECD_02070 and ECD_02071 overlap by 4 nucleotidesECD_02071 and ECD_02072 are separated by 129 nucleotides ECD_02069: ECD_02069 - tRNA-dihydrouridine synthase C, at 2,124,343 to 2,125,290 _02069 ECD_02070: ECD_02070 - UPF0299 family inner membrane protein, at 2,125,528 to 2,125,926 _02070 ECD_02071: ECD_02071 - LrgB family inner membrane protein, at 2,125,923 to 2,126,618 _02071 ECD_02072: ECD_02072 - cytidine/deoxycytidine deaminase, at 2,126,748 to 2,127,632 _02072 Position (kb) 2125 2126Strain fitness (log2 ratio) -2 -1 0 1 2at 2125.031 kb on - strand, within ECD_02069at 2125.290 kb on + strandat 2125.388 kb on - strandat 2125.398 kb on + strandat 2125.398 kb on + strandat 2125.398 kb on + strandat 2125.398 kb on + strandat 2125.399 kb on - strandat 2125.461 kb on - strandat 2125.527 kb on + strandat 2125.558 kb on + strandat 2125.558 kb on + strandat 2125.582 kb on + strand, within ECD_02070at 2125.721 kb on - strand, within ECD_02070at 2125.724 kb on + strand, within ECD_02070at 2125.880 kb on + strand, within ECD_02070at 2126.085 kb on + strand, within ECD_02071at 2126.153 kb on - strand, within ECD_02071at 2126.155 kb on - strand, within ECD_02071at 2126.164 kb on + strand, within ECD_02071at 2126.412 kb on - strand, within ECD_02071at 2126.432 kb on + strand, within ECD_02071at 2126.438 kb on + strand, within ECD_02071at 2126.531 kb on + strand, within ECD_02071at 2126.532 kb on - strand, within ECD_02071at 2126.649 kb on - strandat 2126.649 kb on - strandat 2126.689 kb on + strandat 2126.691 kb on + strandat 2126.734 kb on + strandat 2126.814 kb on - strandat 2126.829 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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2,125,031 - ECD_02069 0.73 +0.4
2,125,290 + -0.3
2,125,388 - +1.0
2,125,398 + +2.5
2,125,398 + -0.3
2,125,398 + -0.9
2,125,398 + +2.2
2,125,399 - -0.5
2,125,461 - +0.9
2,125,527 + -0.1
2,125,558 + +0.5
2,125,558 + +0.5
2,125,582 + ECD_02070 0.14 -2.7
2,125,721 - ECD_02070 0.48 -0.4
2,125,724 + ECD_02070 0.49 -0.5
2,125,880 + ECD_02070 0.88 +0.7
2,126,085 + ECD_02071 0.23 -1.8
2,126,153 - ECD_02071 0.33 -0.0
2,126,155 - ECD_02071 0.33 -0.1
2,126,164 + ECD_02071 0.35 -0.1
2,126,412 - ECD_02071 0.70 -1.3
2,126,432 + ECD_02071 0.73 -0.7
2,126,438 + ECD_02071 0.74 +2.2
2,126,531 + ECD_02071 0.87 +1.0
2,126,532 - ECD_02071 0.88 +0.5
2,126,649 - +0.3
2,126,649 - -0.5
2,126,689 + +0.2
2,126,691 + -0.0
2,126,734 + +0.3
2,126,814 - +0.0
2,126,829 + +1.8

Or see this region's nucleotide sequence