Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02069 and ECD_02070 are separated by 237 nucleotides ECD_02070 and ECD_02071 overlap by 4 nucleotides ECD_02071 and ECD_02072 are separated by 129 nucleotides
ECD_02069: ECD_02069 - tRNA-dihydrouridine synthase C, at 2,124,343 to 2,125,290
_02069
ECD_02070: ECD_02070 - UPF0299 family inner membrane protein, at 2,125,528 to 2,125,926
_02070
ECD_02071: ECD_02071 - LrgB family inner membrane protein, at 2,125,923 to 2,126,618
_02071
ECD_02072: ECD_02072 - cytidine/deoxycytidine deaminase, at 2,126,748 to 2,127,632
_02072
Position (kb)
2125
2126 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2125.031 kb on - strand, within ECD_02069 at 2125.290 kb on + strand at 2125.388 kb on - strand at 2125.398 kb on + strand at 2125.398 kb on + strand at 2125.398 kb on + strand at 2125.398 kb on + strand at 2125.399 kb on - strand at 2125.461 kb on - strand at 2125.527 kb on + strand at 2125.558 kb on + strand at 2125.558 kb on + strand at 2125.582 kb on + strand, within ECD_02070 at 2125.721 kb on - strand, within ECD_02070 at 2125.724 kb on + strand, within ECD_02070 at 2125.880 kb on + strand, within ECD_02070 at 2126.085 kb on + strand, within ECD_02071 at 2126.153 kb on - strand, within ECD_02071 at 2126.155 kb on - strand, within ECD_02071 at 2126.164 kb on + strand, within ECD_02071 at 2126.412 kb on - strand, within ECD_02071 at 2126.432 kb on + strand, within ECD_02071 at 2126.438 kb on + strand, within ECD_02071 at 2126.531 kb on + strand, within ECD_02071 at 2126.532 kb on - strand, within ECD_02071 at 2126.649 kb on - strand at 2126.649 kb on - strand at 2126.689 kb on + strand at 2126.691 kb on + strand at 2126.734 kb on + strand at 2126.814 kb on - strand at 2126.829 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 2,125,031 - ECD_02069 0.73 +0.4 2,125,290 + -0.3 2,125,388 - +1.0 2,125,398 + +2.5 2,125,398 + -0.3 2,125,398 + -0.9 2,125,398 + +2.2 2,125,399 - -0.5 2,125,461 - +0.9 2,125,527 + -0.1 2,125,558 + +0.5 2,125,558 + +0.5 2,125,582 + ECD_02070 0.14 -2.7 2,125,721 - ECD_02070 0.48 -0.4 2,125,724 + ECD_02070 0.49 -0.5 2,125,880 + ECD_02070 0.88 +0.7 2,126,085 + ECD_02071 0.23 -1.8 2,126,153 - ECD_02071 0.33 -0.0 2,126,155 - ECD_02071 0.33 -0.1 2,126,164 + ECD_02071 0.35 -0.1 2,126,412 - ECD_02071 0.70 -1.3 2,126,432 + ECD_02071 0.73 -0.7 2,126,438 + ECD_02071 0.74 +2.2 2,126,531 + ECD_02071 0.87 +1.0 2,126,532 - ECD_02071 0.88 +0.5 2,126,649 - +0.3 2,126,649 - -0.5 2,126,689 + +0.2 2,126,691 + -0.0 2,126,734 + +0.3 2,126,814 - +0.0 2,126,829 + +1.8
Or see this region's nucleotide sequence