Strain Fitness in Escherichia coli BL21 around ECD_02032

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02030 and ECD_02031 are separated by 64 nucleotidesECD_02031 and ECD_02032 overlap by 4 nucleotidesECD_02032 and ECD_02033 are separated by 322 nucleotidesECD_02033 and ECD_02034 are separated by 46 nucleotides ECD_02030: ECD_02030 - putative family 25 glycosyl hydrolase, at 2,080,628 to 2,081,446 _02030 ECD_02031: ECD_02031 - hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase, at 2,081,511 to 2,082,311 _02031 ECD_02032: ECD_02032 - hydoxyethylthiazole kinase, at 2,082,308 to 2,083,096 _02032 ECD_02033: ECD_02033 - hypothetical protein, at 2,083,419 to 2,083,664 _02033 ECD_02034: ECD_02034 - hypothetical protein, at 2,083,711 to 2,084,142 _02034 Position (kb) 2082 2083 2084Strain fitness (log2 ratio) -2 -1 0 1 2at 2081.313 kb on + strand, within ECD_02030at 2081.439 kb on - strandat 2081.498 kb on + strandat 2081.500 kb on + strandat 2081.503 kb on + strandat 2081.503 kb on + strandat 2081.634 kb on - strand, within ECD_02031at 2081.673 kb on - strand, within ECD_02031at 2081.673 kb on - strand, within ECD_02031at 2082.155 kb on - strand, within ECD_02031at 2082.166 kb on - strand, within ECD_02031at 2082.201 kb on - strand, within ECD_02031at 2082.550 kb on + strand, within ECD_02032at 2082.551 kb on - strand, within ECD_02032at 2082.551 kb on - strand, within ECD_02032at 2082.571 kb on - strand, within ECD_02032at 2082.719 kb on - strand, within ECD_02032at 2083.097 kb on - strandat 2083.153 kb on - strandat 2083.418 kb on + strandat 2083.443 kb on + strandat 2083.443 kb on + strandat 2083.454 kb on + strand, within ECD_02033at 2083.454 kb on + strand, within ECD_02033at 2083.577 kb on + strand, within ECD_02033at 2083.649 kb on + strandat 2083.681 kb on + strandat 2083.685 kb on + strandat 2083.685 kb on + strandat 2083.685 kb on + strandat 2083.828 kb on + strand, within ECD_02034at 2084.018 kb on + strand, within ECD_02034

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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2,081,313 + ECD_02030 0.84 +0.0
2,081,439 - +1.3
2,081,498 + +2.1
2,081,500 + +0.8
2,081,503 + +0.5
2,081,503 + +0.0
2,081,634 - ECD_02031 0.15 +1.8
2,081,673 - ECD_02031 0.20 +0.3
2,081,673 - ECD_02031 0.20 -0.0
2,082,155 - ECD_02031 0.80 +0.7
2,082,166 - ECD_02031 0.82 -0.2
2,082,201 - ECD_02031 0.86 +1.8
2,082,550 + ECD_02032 0.31 -1.3
2,082,551 - ECD_02032 0.31 +0.2
2,082,551 - ECD_02032 0.31 +0.3
2,082,571 - ECD_02032 0.33 -1.8
2,082,719 - ECD_02032 0.52 -0.6
2,083,097 - +2.1
2,083,153 - +0.1
2,083,418 + -0.0
2,083,443 + +0.9
2,083,443 + +0.1
2,083,454 + ECD_02033 0.14 +1.0
2,083,454 + ECD_02033 0.14 -1.6
2,083,577 + ECD_02033 0.64 +0.9
2,083,649 + +0.1
2,083,681 + -0.6
2,083,685 + -0.4
2,083,685 + +0.6
2,083,685 + -1.9
2,083,828 + ECD_02034 0.27 -0.8
2,084,018 + ECD_02034 0.71 +0.8

Or see this region's nucleotide sequence