Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02030 and ECD_02031 are separated by 64 nucleotides ECD_02031 and ECD_02032 overlap by 4 nucleotides ECD_02032 and ECD_02033 are separated by 322 nucleotides ECD_02033 and ECD_02034 are separated by 46 nucleotides
ECD_02030: ECD_02030 - putative family 25 glycosyl hydrolase, at 2,080,628 to 2,081,446
_02030
ECD_02031: ECD_02031 - hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase, at 2,081,511 to 2,082,311
_02031
ECD_02032: ECD_02032 - hydoxyethylthiazole kinase, at 2,082,308 to 2,083,096
_02032
ECD_02033: ECD_02033 - hypothetical protein, at 2,083,419 to 2,083,664
_02033
ECD_02034: ECD_02034 - hypothetical protein, at 2,083,711 to 2,084,142
_02034
Position (kb)
2082
2083
2084 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2081.313 kb on + strand, within ECD_02030 at 2081.439 kb on - strand at 2081.498 kb on + strand at 2081.500 kb on + strand at 2081.503 kb on + strand at 2081.503 kb on + strand at 2081.634 kb on - strand, within ECD_02031 at 2081.673 kb on - strand, within ECD_02031 at 2081.673 kb on - strand, within ECD_02031 at 2082.155 kb on - strand, within ECD_02031 at 2082.166 kb on - strand, within ECD_02031 at 2082.201 kb on - strand, within ECD_02031 at 2082.550 kb on + strand, within ECD_02032 at 2082.551 kb on - strand, within ECD_02032 at 2082.551 kb on - strand, within ECD_02032 at 2082.571 kb on - strand, within ECD_02032 at 2082.719 kb on - strand, within ECD_02032 at 2083.097 kb on - strand at 2083.153 kb on - strand at 2083.418 kb on + strand at 2083.443 kb on + strand at 2083.443 kb on + strand at 2083.454 kb on + strand, within ECD_02033 at 2083.454 kb on + strand, within ECD_02033 at 2083.577 kb on + strand, within ECD_02033 at 2083.649 kb on + strand at 2083.681 kb on + strand at 2083.685 kb on + strand at 2083.685 kb on + strand at 2083.685 kb on + strand at 2083.828 kb on + strand, within ECD_02034 at 2084.018 kb on + strand, within ECD_02034
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 2,081,313 + ECD_02030 0.84 +0.0 2,081,439 - +1.3 2,081,498 + +2.1 2,081,500 + +0.8 2,081,503 + +0.5 2,081,503 + +0.0 2,081,634 - ECD_02031 0.15 +1.8 2,081,673 - ECD_02031 0.20 +0.3 2,081,673 - ECD_02031 0.20 -0.0 2,082,155 - ECD_02031 0.80 +0.7 2,082,166 - ECD_02031 0.82 -0.2 2,082,201 - ECD_02031 0.86 +1.8 2,082,550 + ECD_02032 0.31 -1.3 2,082,551 - ECD_02032 0.31 +0.2 2,082,551 - ECD_02032 0.31 +0.3 2,082,571 - ECD_02032 0.33 -1.8 2,082,719 - ECD_02032 0.52 -0.6 2,083,097 - +2.1 2,083,153 - +0.1 2,083,418 + -0.0 2,083,443 + +0.9 2,083,443 + +0.1 2,083,454 + ECD_02033 0.14 +1.0 2,083,454 + ECD_02033 0.14 -1.6 2,083,577 + ECD_02033 0.64 +0.9 2,083,649 + +0.1 2,083,681 + -0.6 2,083,685 + -0.4 2,083,685 + +0.6 2,083,685 + -1.9 2,083,828 + ECD_02034 0.27 -0.8 2,084,018 + ECD_02034 0.71 +0.8
Or see this region's nucleotide sequence