Strain Fitness in Escherichia coli BL21 around ECD_01979

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01979 and ECD_01980 overlap by 1 nucleotides ECD_01979: ECD_01979 - multidrug efflux system, subunit A, at 2,052,937 to 2,054,184 _01979 ECD_01980: ECD_01980 - multidrug efflux system, subunit B, at 2,054,184 to 2,057,306 _01980 Position (kb) 2052 2053 2054 2055Strain fitness (log2 ratio) -2 -1 0 1at 2051.947 kb on + strandat 2051.947 kb on + strandat 2051.947 kb on + strandat 2051.947 kb on + strandat 2051.950 kb on + strandat 2051.964 kb on + strandat 2052.275 kb on + strandat 2052.603 kb on + strandat 2052.603 kb on + strandat 2052.606 kb on + strandat 2052.606 kb on + strandat 2052.606 kb on + strandat 2052.606 kb on + strandat 2052.615 kb on + strandat 2052.619 kb on + strandat 2052.619 kb on + strandat 2052.619 kb on + strandat 2052.733 kb on + strandat 2052.773 kb on - strandat 2052.893 kb on + strandat 2052.894 kb on - strandat 2052.896 kb on + strandat 2053.239 kb on - strand, within ECD_01979at 2053.401 kb on - strand, within ECD_01979at 2053.415 kb on + strand, within ECD_01979at 2053.766 kb on + strand, within ECD_01979at 2053.824 kb on + strand, within ECD_01979at 2054.232 kb on - strandat 2054.533 kb on + strand, within ECD_01980at 2054.931 kb on + strand, within ECD_01980at 2054.932 kb on - strand, within ECD_01980at 2055.084 kb on - strand, within ECD_01980at 2055.089 kb on + strand, within ECD_01980

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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2,051,947 + +0.5
2,051,947 + -1.0
2,051,947 + +0.5
2,051,947 + +0.2
2,051,950 + +0.2
2,051,964 + +0.6
2,052,275 + -0.5
2,052,603 + -0.3
2,052,603 + +1.0
2,052,606 + -0.4
2,052,606 + +0.6
2,052,606 + -0.2
2,052,606 + +0.2
2,052,615 + -0.2
2,052,619 + +0.5
2,052,619 + -1.5
2,052,619 + +1.0
2,052,733 + -0.1
2,052,773 - -1.1
2,052,893 + +0.9
2,052,894 - -0.1
2,052,896 + +0.7
2,053,239 - ECD_01979 0.24 -0.5
2,053,401 - ECD_01979 0.37 -0.3
2,053,415 + ECD_01979 0.38 -2.3
2,053,766 + ECD_01979 0.66 -0.6
2,053,824 + ECD_01979 0.71 -1.1
2,054,232 - +0.7
2,054,533 + ECD_01980 0.11 -0.6
2,054,931 + ECD_01980 0.24 -0.6
2,054,932 - ECD_01980 0.24 -1.2
2,055,084 - ECD_01980 0.29 -0.4
2,055,089 + ECD_01980 0.29 +0.5

Or see this region's nucleotide sequence