Strain Fitness in Escherichia coli BL21 around ECD_01969

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01968 and ECD_01969 are separated by 658 nucleotidesECD_01969 and ECD_01970 are separated by 273 nucleotides ECD_01968: ECD_01968 - colanic acid export protein; outer membrane auxillary lipoprotein, at 2,035,111 to 2,036,250 _01968 ECD_01969: ECD_01969 - inner membrane protein, at 2,036,909 to 2,038,492 _01969 ECD_01970: ECD_01970 - suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane-anchored periplasmic protein, at 2,038,766 to 2,040,619 _01970 Position (kb) 2036 2037 2038 2039Strain fitness (log2 ratio) -1 0 1at 2035.972 kb on - strand, within ECD_01968at 2036.063 kb on - strand, within ECD_01968at 2036.905 kb on + strandat 2036.905 kb on + strandat 2036.905 kb on + strandat 2036.905 kb on + strandat 2036.908 kb on + strandat 2037.171 kb on + strand, within ECD_01969at 2037.253 kb on + strand, within ECD_01969at 2037.551 kb on + strand, within ECD_01969at 2037.551 kb on + strand, within ECD_01969at 2037.679 kb on + strand, within ECD_01969at 2038.680 kb on - strandat 2038.680 kb on - strandat 2038.768 kb on - strandat 2038.768 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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2,035,972 - ECD_01968 0.76 -0.5
2,036,063 - ECD_01968 0.84 -0.3
2,036,905 + +0.2
2,036,905 + -0.3
2,036,905 + +1.7
2,036,905 + +0.3
2,036,908 + +1.1
2,037,171 + ECD_01969 0.17 -0.8
2,037,253 + ECD_01969 0.22 -0.3
2,037,551 + ECD_01969 0.41 -0.7
2,037,551 + ECD_01969 0.41 +0.2
2,037,679 + ECD_01969 0.49 -0.2
2,038,680 - +1.0
2,038,680 - -0.4
2,038,768 - -0.7
2,038,768 - -0.5

Or see this region's nucleotide sequence