Strain Fitness in Escherichia coli BL21 around ECD_01947

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01945 and ECD_01946 are separated by 58 nucleotidesECD_01946 and ECD_01947 overlap by 1 nucleotidesECD_01947 and ECD_01948 are separated by 372 nucleotides ECD_01945: ECD_01945 - glucose-1-phosphate thymidylyltransferase, at 2,009,172 to 2,010,050 _01945 ECD_01946: ECD_01946 - dTDP-L-rhamnose synthase, NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit, at 2,010,109 to 2,011,008 _01946 ECD_01947: ECD_01947 - dTDP-glucose 4,6 dehydratase, NAD(P)-binding, at 2,011,008 to 2,012,093 _01947 ECD_01948: ECD_01948 - putative regulatory subunit for GalU, at 2,012,466 to 2,013,359 _01948 Position (kb) 2011 2012 2013Strain fitness (log2 ratio) -1 0 1 2 3at 2010.546 kb on - strand, within ECD_01946at 2010.546 kb on - strand, within ECD_01946at 2010.974 kb on - strandat 2011.025 kb on - strandat 2011.110 kb on - strandat 2011.161 kb on - strand, within ECD_01947at 2011.217 kb on - strand, within ECD_01947at 2011.785 kb on - strand, within ECD_01947at 2012.109 kb on - strandat 2012.109 kb on - strandat 2012.195 kb on - strandat 2012.407 kb on - strandat 2012.534 kb on - strandat 2012.553 kb on - strandat 2012.553 kb on - strandat 2012.553 kb on - strandat 2012.553 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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2,010,546 - ECD_01946 0.49 +2.0
2,010,546 - ECD_01946 0.49 +0.9
2,010,974 - +0.1
2,011,025 - +0.6
2,011,110 - -0.2
2,011,161 - ECD_01947 0.14 -0.4
2,011,217 - ECD_01947 0.19 -0.1
2,011,785 - ECD_01947 0.72 -1.1
2,012,109 - -0.2
2,012,109 - +0.0
2,012,195 - -0.4
2,012,407 - -0.0
2,012,534 - +3.7
2,012,553 - -1.1
2,012,553 - +0.3
2,012,553 - +0.5
2,012,553 - +0.9

Or see this region's nucleotide sequence