Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01702 and ECD_01703 are separated by 12 nucleotides ECD_01703 and ECD_01704 are separated by 104 nucleotides ECD_01704 and ECD_01705 are separated by 7 nucleotides
ECD_01702: ECD_01702 - chito-oligosaccharide deacetylase, at 1,760,799 to 1,761,548
_01702
ECD_01703: ECD_01703 - phospho-chitobiase; general 6-phospho-beta-glucosidase activity, at 1,761,561 to 1,762,913
_01703
ECD_01704: ECD_01704 - repressor of chb operon for N,N'-diacetylchitobiose utilization, at 1,763,018 to 1,763,860
_01704
ECD_01705: ECD_01705 - N,N'-diacetylchitobiose-specific enzyme IIA component of PTS, at 1,763,868 to 1,764,218
_01705
Position (kb)
1761
1762
1763 Strain fitness (log2 ratio)
-1
0
1 at 1760.921 kb on + strand, within ECD_01702 at 1761.162 kb on - strand, within ECD_01702 at 1761.332 kb on + strand, within ECD_01702 at 1761.332 kb on + strand, within ECD_01702 at 1761.333 kb on - strand, within ECD_01702 at 1761.538 kb on - strand at 1761.798 kb on - strand, within ECD_01703 at 1761.905 kb on - strand, within ECD_01703 at 1761.905 kb on - strand, within ECD_01703 at 1761.968 kb on - strand, within ECD_01703 at 1762.129 kb on + strand, within ECD_01703 at 1762.142 kb on - strand, within ECD_01703
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 1,760,921 + ECD_01702 0.16 +0.0 1,761,162 - ECD_01702 0.48 -1.7 1,761,332 + ECD_01702 0.71 +0.5 1,761,332 + ECD_01702 0.71 +0.4 1,761,333 - ECD_01702 0.71 -0.0 1,761,538 - +1.4 1,761,798 - ECD_01703 0.18 -0.3 1,761,905 - ECD_01703 0.25 +1.2 1,761,905 - ECD_01703 0.25 -0.9 1,761,968 - ECD_01703 0.30 -0.9 1,762,129 + ECD_01703 0.42 +0.5 1,762,142 - ECD_01703 0.43 -0.2
Or see this region's nucleotide sequence