Strain Fitness in Escherichia coli BL21 around ECD_01642

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01640 and ECD_01641 are separated by 63 nucleotidesECD_01641 and ECD_01642 are separated by 3 nucleotidesECD_01642 and ECD_01643 are separated by 20 nucleotides ECD_01640: ECD_01640 - putative 4Fe-4S ferridoxin-type protein; FNR, Nar, NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex, at 1,695,614 to 1,696,282 _01640 ECD_01641: ECD_01641 - FNR, Nar, NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex, at 1,696,346 to 1,696,993 _01641 ECD_01642: ECD_01642 - putative oxidoreductase subunit, at 1,696,997 to 1,699,099 _01642 ECD_01643: ECD_01643 - putative 4Fe-4S ferridoxin-type protein; FNR, Nar, NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex, at 1,699,120 to 1,699,746 _01643 Position (kb) 1696 1697 1698 1699 1700Strain fitness (log2 ratio) -3 -2 -1 0 1at 1696.431 kb on + strand, within ECD_01641at 1697.216 kb on - strand, within ECD_01642at 1697.237 kb on - strand, within ECD_01642at 1697.266 kb on - strand, within ECD_01642at 1697.479 kb on - strand, within ECD_01642at 1697.645 kb on - strand, within ECD_01642at 1698.419 kb on - strand, within ECD_01642at 1699.582 kb on - strand, within ECD_01643

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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1,696,431 + ECD_01641 0.13 -0.4
1,697,216 - ECD_01642 0.10 +0.2
1,697,237 - ECD_01642 0.11 -1.4
1,697,266 - ECD_01642 0.13 +0.7
1,697,479 - ECD_01642 0.23 -1.3
1,697,645 - ECD_01642 0.31 -0.5
1,698,419 - ECD_01642 0.68 -3.0
1,699,582 - ECD_01643 0.74 +0.6

Or see this region's nucleotide sequence