Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01597 and ECD_01598 overlap by 1 nucleotides ECD_01598 and ECD_01599 overlap by 8 nucleotides ECD_01599 and ECD_01600 are separated by 0 nucleotides
ECD_01597: ECD_01597 - SoxR iron-sulfur cluster reduction factor component; inner membrane protein of electron transport complex, at 1,650,963 to 1,651,544
_01597
ECD_01598: ECD_01598 - SoxR iron-sulfur cluster reduction factor component; putative iron-sulfur protein, at 1,651,544 to 1,652,122
_01598
ECD_01599: ECD_01599 - SoxR iron-sulfur cluster reduction factor component; putative membrane-associated NADH oxidoreductase of electron transport complex, at 1,652,115 to 1,654,337
_01599
ECD_01600: ECD_01600 - SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex, at 1,654,338 to 1,655,396
_01600
Position (kb) 1652
1653
1654
1655 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1651.193 kb on + strand, within ECD_01597 at 1651.499 kb on + strand at 1651.542 kb on + strand at 1651.963 kb on + strand, within ECD_01598 at 1652.264 kb on + strand at 1652.431 kb on + strand, within ECD_01599 at 1653.004 kb on + strand, within ECD_01599 at 1653.548 kb on + strand, within ECD_01599 at 1654.355 kb on + strand at 1654.355 kb on + strand at 1654.355 kb on + strand at 1654.913 kb on + strand, within ECD_01600 at 1654.952 kb on + strand, within ECD_01600
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 1,651,193 + ECD_01597 0.40 +0.6 1,651,499 + -0.4 1,651,542 + -0.0 1,651,963 + ECD_01598 0.72 -0.4 1,652,264 + -1.0 1,652,431 + ECD_01599 0.14 -0.6 1,653,004 + ECD_01599 0.40 -0.3 1,653,548 + ECD_01599 0.64 -1.4 1,654,355 + +0.3 1,654,355 + +0.5 1,654,355 + -0.8 1,654,913 + ECD_01600 0.54 -3.3 1,654,952 + ECD_01600 0.58 -2.5
Or see this region's nucleotide sequence