Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01245 and ECD_01246 are separated by 39 nucleotides ECD_01246 and ECD_01247 overlap by 4 nucleotides ECD_01247 and ECD_01248 are separated by 219 nucleotides
ECD_01245: ECD_01245 - 23S rRNA pseudouridine(2605) synthase, at 1,313,222 to 1,314,097
_01245
ECD_01246: ECD_01246 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 1,314,137 to 1,314,727
_01246
ECD_01247: ECD_01247 - putative EmrKY-TolC system oxoacyl-(acyl carrier protein) reductase, at 1,314,724 to 1,315,482
_01247
ECD_01248: ECD_01248 - inner membrane protein, S49 peptidase family protein, at 1,315,702 to 1,316,751
_01248
Position (kb)
1314
1315 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1313.153 kb on + strand at 1313.221 kb on + strand at 1313.222 kb on - strand at 1313.287 kb on + strand at 1313.389 kb on + strand, within ECD_01245 at 1313.389 kb on + strand, within ECD_01245 at 1313.639 kb on + strand, within ECD_01245 at 1313.932 kb on + strand, within ECD_01245 at 1313.932 kb on + strand, within ECD_01245 at 1313.932 kb on + strand, within ECD_01245 at 1313.933 kb on - strand, within ECD_01245 at 1314.082 kb on + strand at 1314.207 kb on - strand, within ECD_01246 at 1314.335 kb on - strand, within ECD_01246 at 1314.337 kb on - strand, within ECD_01246 at 1314.337 kb on - strand, within ECD_01246 at 1314.446 kb on - strand, within ECD_01246 at 1314.536 kb on - strand, within ECD_01246 at 1314.990 kb on - strand, within ECD_01247 at 1314.990 kb on - strand, within ECD_01247 at 1315.036 kb on - strand, within ECD_01247 at 1315.070 kb on - strand, within ECD_01247 at 1315.316 kb on - strand, within ECD_01247 at 1315.523 kb on - strand at 1315.528 kb on - strand at 1315.647 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 1,313,153 + +0.1 1,313,221 + +0.6 1,313,222 - +0.3 1,313,287 + -3.1 1,313,389 + ECD_01245 0.19 -0.3 1,313,389 + ECD_01245 0.19 +0.1 1,313,639 + ECD_01245 0.48 +0.2 1,313,932 + ECD_01245 0.81 -1.8 1,313,932 + ECD_01245 0.81 +0.3 1,313,932 + ECD_01245 0.81 -0.1 1,313,933 - ECD_01245 0.81 +0.3 1,314,082 + -0.4 1,314,207 - ECD_01246 0.12 -0.9 1,314,335 - ECD_01246 0.34 -2.3 1,314,337 - ECD_01246 0.34 -0.1 1,314,337 - ECD_01246 0.34 -0.2 1,314,446 - ECD_01246 0.52 -0.8 1,314,536 - ECD_01246 0.68 -1.1 1,314,990 - ECD_01247 0.35 +0.3 1,314,990 - ECD_01247 0.35 -0.3 1,315,036 - ECD_01247 0.41 -0.0 1,315,070 - ECD_01247 0.46 +1.0 1,315,316 - ECD_01247 0.78 +0.5 1,315,523 - +1.6 1,315,528 - -0.6 1,315,647 - -0.7
Or see this region's nucleotide sequence