Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00779 and ECD_00780 are separated by 298 nucleotides ECD_00780 and ECD_00781 are separated by 352 nucleotides ECD_00781 and ECD_00782 are separated by 48 nucleotides
ECD_00779: ECD_00779 - Fe-binding and storage protein; stress-inducible DNA-binding protein, at 832,400 to 832,903
_00779
ECD_00780: ECD_00780 - threonine and homoserine efflux system, at 833,202 to 834,089
_00780
ECD_00781: ECD_00781 - outer membrane protein X, at 834,442 to 834,957
_00781
ECD_00782: ECD_00782 - OPG biosynthetic transmembrane phosphoethanolamine transferase, at 835,006 to 836,589
_00782
Position (kb) 833
834
835 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 832.273 kb on + strand at 832.371 kb on - strand at 832.412 kb on - strand at 832.612 kb on + strand, within ECD_00779 at 832.635 kb on - strand, within ECD_00779 at 832.925 kb on + strand at 832.926 kb on - strand at 832.948 kb on + strand at 832.949 kb on - strand at 832.952 kb on + strand at 833.078 kb on + strand at 833.130 kb on + strand at 833.293 kb on - strand, within ECD_00780 at 833.423 kb on - strand, within ECD_00780 at 833.817 kb on - strand, within ECD_00780 at 833.861 kb on - strand, within ECD_00780 at 833.913 kb on - strand, within ECD_00780 at 833.913 kb on - strand, within ECD_00780 at 833.997 kb on - strand, within ECD_00780 at 833.997 kb on - strand, within ECD_00780 at 834.043 kb on - strand at 834.049 kb on - strand at 834.049 kb on - strand at 834.072 kb on - strand at 834.106 kb on - strand at 834.116 kb on - strand at 834.272 kb on + strand at 834.272 kb on + strand at 834.519 kb on + strand, within ECD_00781 at 834.519 kb on + strand, within ECD_00781 at 834.679 kb on + strand, within ECD_00781 at 834.697 kb on + strand, within ECD_00781 at 834.755 kb on + strand, within ECD_00781 at 834.774 kb on + strand, within ECD_00781 at 834.802 kb on + strand, within ECD_00781 at 834.835 kb on + strand, within ECD_00781 at 834.955 kb on + strand at 834.955 kb on + strand at 835.080 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 832,273 + -0.3 832,371 - +0.2 832,412 - +0.4 832,612 + ECD_00779 0.42 -0.4 832,635 - ECD_00779 0.47 -0.4 832,925 + -0.8 832,926 - -0.0 832,948 + +1.2 832,949 - +0.8 832,952 + -0.2 833,078 + +0.6 833,130 + -3.2 833,293 - ECD_00780 0.10 +0.0 833,423 - ECD_00780 0.25 +1.0 833,817 - ECD_00780 0.69 +0.2 833,861 - ECD_00780 0.74 +0.4 833,913 - ECD_00780 0.80 +0.2 833,913 - ECD_00780 0.80 -0.3 833,997 - ECD_00780 0.90 +0.1 833,997 - ECD_00780 0.90 +1.0 834,043 - +0.4 834,049 - -0.7 834,049 - +0.9 834,072 - -0.1 834,106 - +0.1 834,116 - +0.0 834,272 + +0.7 834,272 + -0.5 834,519 + ECD_00781 0.15 -0.9 834,519 + ECD_00781 0.15 +1.1 834,679 + ECD_00781 0.46 +0.5 834,697 + ECD_00781 0.49 +1.0 834,755 + ECD_00781 0.61 -0.2 834,774 + ECD_00781 0.64 +0.0 834,802 + ECD_00781 0.70 +1.6 834,835 + ECD_00781 0.76 +0.6 834,955 + -0.1 834,955 + +0.0 835,080 - -0.4
Or see this region's nucleotide sequence