Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00574 and ECD_00575 are separated by 244 nucleotides ECD_00575 and ECD_00576 are separated by 120 nucleotides ECD_00576 and ECD_00577 are separated by 220 nucleotides
ECD_00574: ECD_00574 - alkyl hydroperoxide reductase, C22 subunit, at 598,775 to 599,338
_00574
ECD_00575: ECD_00575 - alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding, at 599,583 to 601,148
_00575
ECD_00576: ECD_00576 - universal stress protein UP12, at 601,269 to 601,697
_00576
ECD_00577: ECD_00577 - putative Zn-dependent NAD(P)-binding oxidoreductase, at 601,918 to 603,156
_00577
Position (kb) 599
600
601
602 Strain fitness (log2 ratio) -1
0
1
2 at 598.585 kb on - strand at 598.623 kb on + strand at 598.678 kb on + strand at 598.683 kb on + strand at 598.743 kb on + strand at 598.743 kb on + strand at 598.744 kb on - strand at 598.772 kb on + strand at 598.977 kb on + strand, within ECD_00574 at 598.977 kb on + strand, within ECD_00574 at 598.977 kb on + strand, within ECD_00574 at 598.977 kb on + strand, within ECD_00574 at 598.986 kb on + strand, within ECD_00574 at 598.990 kb on + strand, within ECD_00574 at 599.092 kb on + strand, within ECD_00574 at 599.243 kb on + strand, within ECD_00574 at 599.247 kb on + strand, within ECD_00574 at 599.247 kb on + strand, within ECD_00574 at 599.329 kb on + strand at 599.397 kb on + strand at 599.397 kb on + strand at 599.397 kb on + strand at 599.405 kb on + strand at 599.405 kb on + strand at 599.676 kb on - strand at 599.747 kb on + strand, within ECD_00575 at 599.748 kb on - strand, within ECD_00575 at 599.766 kb on - strand, within ECD_00575 at 599.972 kb on + strand, within ECD_00575 at 599.973 kb on - strand, within ECD_00575 at 600.013 kb on + strand, within ECD_00575 at 600.219 kb on + strand, within ECD_00575 at 600.220 kb on - strand, within ECD_00575 at 600.282 kb on - strand, within ECD_00575 at 600.914 kb on + strand, within ECD_00575 at 601.217 kb on - strand at 601.258 kb on + strand at 601.371 kb on + strand, within ECD_00576 at 601.694 kb on - strand at 601.694 kb on - strand at 601.694 kb on - strand at 601.694 kb on - strand at 601.933 kb on + strand at 601.934 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 598,585 - +0.4 598,623 + -0.1 598,678 + -1.3 598,683 + +0.1 598,743 + -1.6 598,743 + -0.1 598,744 - -0.6 598,772 + -0.6 598,977 + ECD_00574 0.36 +0.2 598,977 + ECD_00574 0.36 +2.2 598,977 + ECD_00574 0.36 +0.0 598,977 + ECD_00574 0.36 +0.1 598,986 + ECD_00574 0.37 -0.3 598,990 + ECD_00574 0.38 -0.8 599,092 + ECD_00574 0.56 +0.9 599,243 + ECD_00574 0.83 +0.5 599,247 + ECD_00574 0.84 +0.2 599,247 + ECD_00574 0.84 -0.1 599,329 + +0.7 599,397 + -0.5 599,397 + +0.5 599,397 + +0.1 599,405 + +0.7 599,405 + +1.0 599,676 - +0.2 599,747 + ECD_00575 0.10 -0.1 599,748 - ECD_00575 0.11 -0.8 599,766 - ECD_00575 0.12 +0.3 599,972 + ECD_00575 0.25 -0.3 599,973 - ECD_00575 0.25 -0.3 600,013 + ECD_00575 0.27 -1.4 600,219 + ECD_00575 0.41 -0.5 600,220 - ECD_00575 0.41 -0.5 600,282 - ECD_00575 0.45 -1.5 600,914 + ECD_00575 0.85 -1.0 601,217 - -0.3 601,258 + -0.5 601,371 + ECD_00576 0.24 +0.9 601,694 - +0.4 601,694 - -0.5 601,694 - +0.1 601,694 - +0.4 601,933 + -1.1 601,934 - -0.6
Or see this region's nucleotide sequence