Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00551 and ECD_00552 are separated by 2 nucleotides ECD_00552 and ECD_00553 overlap by 4 nucleotides ECD_00553 and ECD_00554 are separated by 215 nucleotides
ECD_00551: ECD_00551 - enterobactin/ferrienterobactin esterase, at 573,224 to 574,426
_00551
ECD_00552: ECD_00552 - stimulator of EntF adenylation activity, MbtH-like, at 574,429 to 574,647
_00552
ECD_00553: ECD_00553 - enterobactin synthase multienzyme complex component, ATP-dependent, at 574,644 to 578,525
_00553
ECD_00554: ECD_00554 - regulator of length of O-antigen component of lipopolysaccharide chains, at 578,741 to 579,874
_00554
Position (kb) 574
575
576
577
578
579 Strain fitness (log2 ratio) -2
-1
0
1 at 573.909 kb on - strand, within ECD_00551 at 573.962 kb on - strand, within ECD_00551 at 574.028 kb on - strand, within ECD_00551 at 574.125 kb on + strand, within ECD_00551 at 574.299 kb on + strand, within ECD_00551 at 574.475 kb on + strand, within ECD_00552 at 574.475 kb on + strand, within ECD_00552 at 574.657 kb on + strand at 574.738 kb on - strand at 574.812 kb on - strand at 575.173 kb on + strand, within ECD_00553 at 575.312 kb on + strand, within ECD_00553 at 575.336 kb on + strand, within ECD_00553 at 575.448 kb on + strand, within ECD_00553 at 575.449 kb on - strand, within ECD_00553 at 575.702 kb on - strand, within ECD_00553 at 575.844 kb on + strand, within ECD_00553 at 575.942 kb on + strand, within ECD_00553 at 575.942 kb on + strand, within ECD_00553 at 575.943 kb on - strand, within ECD_00553 at 575.943 kb on - strand, within ECD_00553 at 575.943 kb on - strand, within ECD_00553 at 575.943 kb on - strand, within ECD_00553 at 575.943 kb on - strand, within ECD_00553 at 575.943 kb on - strand, within ECD_00553 at 576.311 kb on - strand, within ECD_00553 at 576.314 kb on + strand, within ECD_00553 at 576.314 kb on + strand, within ECD_00553 at 576.372 kb on + strand, within ECD_00553 at 576.373 kb on - strand, within ECD_00553 at 576.373 kb on - strand, within ECD_00553 at 576.438 kb on + strand, within ECD_00553 at 576.438 kb on + strand, within ECD_00553 at 576.438 kb on + strand, within ECD_00553 at 576.438 kb on + strand, within ECD_00553 at 576.440 kb on + strand, within ECD_00553 at 576.441 kb on - strand, within ECD_00553 at 576.441 kb on - strand, within ECD_00553 at 576.449 kb on + strand, within ECD_00553 at 576.449 kb on + strand, within ECD_00553 at 576.449 kb on + strand, within ECD_00553 at 576.450 kb on - strand, within ECD_00553 at 576.807 kb on - strand, within ECD_00553 at 576.832 kb on + strand, within ECD_00553 at 576.853 kb on + strand, within ECD_00553 at 576.872 kb on + strand, within ECD_00553 at 576.873 kb on - strand, within ECD_00553 at 576.877 kb on + strand, within ECD_00553 at 576.877 kb on + strand, within ECD_00553 at 576.877 kb on + strand, within ECD_00553 at 576.877 kb on + strand, within ECD_00553 at 576.877 kb on + strand, within ECD_00553 at 576.878 kb on - strand, within ECD_00553 at 576.902 kb on - strand, within ECD_00553 at 576.998 kb on + strand, within ECD_00553 at 577.050 kb on + strand, within ECD_00553 at 577.149 kb on + strand, within ECD_00553 at 577.150 kb on - strand, within ECD_00553 at 577.150 kb on - strand, within ECD_00553 at 577.150 kb on - strand, within ECD_00553 at 577.366 kb on - strand, within ECD_00553 at 577.442 kb on + strand, within ECD_00553 at 577.443 kb on - strand, within ECD_00553 at 577.477 kb on + strand, within ECD_00553 at 578.138 kb on + strand at 578.138 kb on + strand at 578.180 kb on + strand at 578.292 kb on + strand at 578.346 kb on - strand at 578.388 kb on - strand at 578.436 kb on + strand at 579.328 kb on + strand, within ECD_00554
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 573,909 - ECD_00551 0.57 -1.0 573,962 - ECD_00551 0.61 +1.5 574,028 - ECD_00551 0.67 -0.2 574,125 + ECD_00551 0.75 +0.7 574,299 + ECD_00551 0.89 -2.7 574,475 + ECD_00552 0.21 -0.3 574,475 + ECD_00552 0.21 -0.8 574,657 + +1.1 574,738 - +0.0 574,812 - -0.5 575,173 + ECD_00553 0.14 -1.2 575,312 + ECD_00553 0.17 -1.5 575,336 + ECD_00553 0.18 -0.7 575,448 + ECD_00553 0.21 -0.1 575,449 - ECD_00553 0.21 -0.1 575,702 - ECD_00553 0.27 +0.1 575,844 + ECD_00553 0.31 +0.2 575,942 + ECD_00553 0.33 -0.6 575,942 + ECD_00553 0.33 -1.2 575,943 - ECD_00553 0.33 -2.5 575,943 - ECD_00553 0.33 -1.2 575,943 - ECD_00553 0.33 -0.1 575,943 - ECD_00553 0.33 -0.6 575,943 - ECD_00553 0.33 -0.6 575,943 - ECD_00553 0.33 +0.6 576,311 - ECD_00553 0.43 +0.3 576,314 + ECD_00553 0.43 +0.3 576,314 + ECD_00553 0.43 -0.8 576,372 + ECD_00553 0.45 -1.5 576,373 - ECD_00553 0.45 +0.4 576,373 - ECD_00553 0.45 -0.5 576,438 + ECD_00553 0.46 +0.2 576,438 + ECD_00553 0.46 -0.3 576,438 + ECD_00553 0.46 +0.1 576,438 + ECD_00553 0.46 +0.0 576,440 + ECD_00553 0.46 +0.2 576,441 - ECD_00553 0.46 -0.5 576,441 - ECD_00553 0.46 -0.2 576,449 + ECD_00553 0.46 -0.4 576,449 + ECD_00553 0.46 -0.7 576,449 + ECD_00553 0.46 -0.1 576,450 - ECD_00553 0.47 +0.1 576,807 - ECD_00553 0.56 +0.0 576,832 + ECD_00553 0.56 +0.3 576,853 + ECD_00553 0.57 +1.0 576,872 + ECD_00553 0.57 -0.6 576,873 - ECD_00553 0.57 -1.6 576,877 + ECD_00553 0.58 -0.3 576,877 + ECD_00553 0.58 +1.1 576,877 + ECD_00553 0.58 +0.4 576,877 + ECD_00553 0.58 -1.3 576,877 + ECD_00553 0.58 +1.7 576,878 - ECD_00553 0.58 -1.9 576,902 - ECD_00553 0.58 -0.8 576,998 + ECD_00553 0.61 +0.6 577,050 + ECD_00553 0.62 +0.5 577,149 + ECD_00553 0.65 -0.1 577,150 - ECD_00553 0.65 +0.5 577,150 - ECD_00553 0.65 +0.9 577,150 - ECD_00553 0.65 +0.8 577,366 - ECD_00553 0.70 -2.7 577,442 + ECD_00553 0.72 +0.3 577,443 - ECD_00553 0.72 +0.5 577,477 + ECD_00553 0.73 +0.0 578,138 + -1.1 578,138 + +0.1 578,180 + -0.1 578,292 + +0.1 578,346 - -0.7 578,388 - -0.5 578,436 + +0.7 579,328 + ECD_00554 0.52 -0.2
Or see this region's nucleotide sequence